Merge pull request #1020 from nextstrain/xbb-is-22F

Elevate XBB as 22F
nextstrain · Oct 24, 2022 · 2b13c87 · 2b13c87
2 parents fd8ed42 + fcf0d2e
commit 2b13c87
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Showing 6 changed files with 28 additions and 15 deletions.
diff --git a/defaults/clade_emergence_dates.tsv b/defaults/clade_emergence_dates.tsv
@@ -30,3 +30,4 @@ Nextstrain_clade	first_sequence
 22C (Omicron)	2021-12-01
 22D (Omicron)	2022-04-01
 22E (Omicron)	2022-07-10
+22F (Omicron)	2022-08-01
diff --git a/defaults/clade_hierarchy.tsv b/defaults/clade_hierarchy.tsv
@@ -28,3 +28,4 @@ clade	parent	WHO
 22C	21L	Omicron
 22D	21L	Omicron
 22E	22B	Omicron
+22F	21L	Omicron
diff --git a/defaults/clades.tsv b/defaults/clades.tsv
@@ -163,3 +163,9 @@ clade	gene	site	alt
 22E (Omicron)	nuc	16935	A
 22E (Omicron)	nuc	28312	T
 22E (Omicron)	nuc	22942	A
+
+22F (Omicron)	clade	21L (Omicron)
+22F (Omicron)	nuc	15461	A
+22F (Omicron)	nuc	17859	C
+22F (Omicron)	nuc	23019	C
+22F (Omicron)	nuc	26275	G
diff --git a/defaults/clades_nextstrain.tsv b/defaults/clades_nextstrain.tsv
@@ -163,3 +163,9 @@ clade	gene	site	alt
 22E	nuc	16935	A
 22E	nuc	28312	T
 22E	nuc	22942	A
+
+22F	clade	21L
+22F	nuc	15461	A
+22F	nuc	17859	C
+22F	nuc	23019	C
+22F	nuc	26275	G
diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv
@@ -31869,13 +31869,12 @@ clade_membership	22B (Omicron)
 clade_membership	22C (Omicron)
 clade_membership	22D (Omicron)
 clade_membership	22E (Omicron)
+clade_membership	22F (Omicron)
 
 ################
 
 
-emerging_lineage	BQ.1
 emerging_lineage	BQ.1.1
-emerging_lineage	XBB
 emerging_lineage	BA.2.3.20
 emerging_lineage	BN.1
 emerging_lineage	BM.1.1

diff --git a/defaults/emerging_lineages.tsv b/defaults/emerging_lineages.tsv
@@ -158,21 +158,21 @@ clade	gene	site	alt
 22D (Omicron)	nuc	3796	T
 22D (Omicron)	nuc	26275	G
 
-BQ.1	clade	22B (Omicron)
-BQ.1	nuc	14257	C
-BQ.1	nuc	16935	A
-BQ.1	nuc	28312	T
-BQ.1	nuc	22942	A
-
-BQ.1.1	clade	BQ.1
+22E (Omicron)	clade	22B (Omicron)
+22E (Omicron)	nuc	14257	C
+22E (Omicron)	nuc	16935	A
+22E (Omicron)	nuc	28312	T
+22E (Omicron)	nuc	22942	A
+
+22F (Omicron)	clade	21L (Omicron)
+22F (Omicron)	nuc	15461	A
+22F (Omicron)	nuc	17859	C
+22F (Omicron)	nuc	23019	C
+22F (Omicron)	nuc	26275	G
+
+BQ.1.1	clade	22E (Omicron)
 BQ.1.1	nuc	22599	C
 
-XBB	clade	21L (Omicron)
-XBB	nuc	15461	A
-XBB	nuc	17859	C
-XBB	nuc	23019	C
-XBB	nuc	26275	G
-
 BA.2.3.20	clade	21L (Omicron)
 BA.2.3.20	nuc	6770	G
 BA.2.3.20	nuc	22332	A