3.9.0 #48
Workflow file for this run
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| # Submit new version to Bioconda (https://github.com/bioconda/bioconda-recipes) | |
| name: bioconda | |
| on: | |
| release: | |
| types: | |
| - published | |
| repository_dispatch: | |
| types: bioconda | |
| workflow_dispatch: | |
| workflow_call: | |
| concurrency: | |
| group: bioconda-${{ github.workflow }}-${{ github.ref_type }}-${{ github.event.pull_request.number || github.ref || github.run_id }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -euxo pipefail {0} | |
| env: | |
| GITHUB_REPOSITORY_URL: ${{ github.server_url }}/${{ github.repository }} | |
| VERBOSE: 1 | |
| jobs: | |
| publish-to-bioconda: | |
| if: "!github.event.release.prerelease" | |
| name: "Publish to Bioconda" | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: "Checkout code" | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: "Publish to Bioconda" | |
| id: bump-version | |
| shell: bash | |
| run: | | |
| export GITHUB_TOKEN="${{ secrets.GH_TOKEN_NEXTSTRAIN_BOT_REPO }}" | |
| mkdir -p "${HOME}/bin" | |
| export PATH="${HOME}/bin:${PATH}" | |
| curl -fsSL "https://github.com/cli/cli/releases/download/v2.42.1/gh_2.42.1_linux_amd64.tar.gz" | tar xz -C "${HOME}/bin" --strip-components=2 gh_2.42.1_linux_amd64/bin/gh | |
| curl -fsSL "https://github.com/TomWright/dasel/releases/download/v2.5.0/dasel_linux_amd64" -o "${HOME}/bin/dasel" && chmod +x "${HOME}/bin/dasel" | |
| curl -fsSL "https://github.com/jqlang/jq/releases/download/jq-1.7.1/jq-linux-amd64" -o ${HOME}/bin/jq && chmod +x ${HOME}/bin/jq | |
| git config --global user.email "${{ secrets.GIT_USER_EMAIL }}" | |
| git config --global user.name "${{ secrets.GIT_USER_NAME }}" | |
| ./scripts/publish_bioconda |