2.2.0

Nextclade CLI 2.2.0

• Feature When --retry-reverse-complement argument is used, and reverse complement transform is applied to a sequence, only the fasta header in the nucleotide alignment is changed by addition of |(reverse complement) to the sequence name, not in all output files. Other output files signal this transformation with a boolean property or a column isReverseComplement.

Commit history

(click to expand)

• [e257352] chore: add issue reporter to changelog

• [2a78b1b] docs: adjust version in changelog

• [f344094] Merge pull request #915 from nextstrain/add-issue-reporter-to-changelog

• [c32c817] feat: remove reverse complement suffix from outputs except nuc fasta

Followup of #887

We reconsidered: we will only append suffix to sequence names in aligned fasta output. So this removes the suffix from all other places (incl. translation fastas).

• [13d14fa] feat: adjust warning message when a sequence is reverse complemented

• [1a360e3] chore: upgrade rust to 1.62.0

• [04e6233] Merge pull request #919 from nextstrain/chore/upgrade-rust

• [9c6044c] Merge pull request #916 from nextstrain/feat/rev-compl-suffix

• [a992ace] docs: add changes to changelog

• [7b02072] chore(ci): clear ci caches [skip ci]

• [4ddd049] chore(ci): add --frozen cargo flag in ci

• [f4d9a9e] chore(ci): run build and check lockfile as a part of release script

• [bf5be99] chore(ci): add more release checks [skip ci]

• [d455e0a] chore: rearrange fields in toml files for more informative release diffs [skip ci]]

• [2e71d7c] chore: release cli 2.2.0

• [6433303] chore(ci): fix ci build by using --locked instead of --frozen