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ingest: use new augur curate commands #67

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joverlee521 opened this issue Jul 3, 2024 · 0 comments · Fixed by #70
Closed
2 tasks

ingest: use new augur curate commands #67

joverlee521 opened this issue Jul 3, 2024 · 0 comments · Fixed by #70

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@joverlee521
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Follow up to nextstrain/ingest#43, nextstrain/ingest#44, and blocked on new Augur release.

TODOs

  • update transform rule to use new augur curate commands
  • update ingest/vendored to remove cruft

Since we're making changes here anyways, consider renaming transform to curate to conform to the pathogen-repo-guide.
@joverlee521 joverlee521 mentioned this issue Jul 3, 2024
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@j23414 j23414 linked a pull request Jul 17, 2024 that will close this issue
ingest: use new augur curate commands #70
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@j23414 j23414 mentioned this issue Jul 17, 2024
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ingest: use new augur curate commands nextstrain/rsv
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