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Remove scripts ported to augur curate #44

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joverlee521 opened this issue Jul 3, 2024 · 0 comments · Fixed by #45
Closed

Remove scripts ported to augur curate #44

joverlee521 opened this issue Jul 3, 2024 · 0 comments · Fixed by #45
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@joverlee521

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@joverlee521
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Follow up to #43

The following scripts should be removed

  • apply-geolocation-rules
  • merge-user-metadata
  • transform-authors
  • transform-field-names
  • transform-genbank-location
  • transform-strain-names

The associated tests can also be removed

  • tests/transform-field-names/
  • tests/transform-genbank-location/
  • tests/transform-strain-names/

Consider removing cram job from the CI workflow since all cram tests will be removed.
This was referenced Jul 3, 2024
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@joverlee521 joverlee521 self-assigned this Jul 11, 2024
joverlee521 added a commit that referenced this issue Jul 11, 2024
@joverlee521
Remove all scripts and tests that have been ported to Augur
7277827 
Resolves #44
@joverlee521 joverlee521 mentioned this issue Jul 11, 2024
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@j23414 j23414 mentioned this issue Jul 16, 2024
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Remove curate scripts nextstrain/ingest
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