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Migrate CI to GitHub Actions #80

Merged
merged 2 commits into from
Apr 5, 2022
Merged

Migrate CI to GitHub Actions #80

merged 2 commits into from
Apr 5, 2022

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j23414
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@j23414 j23414 commented Apr 4, 2022

Hi @joverlee521, this is just updating our pathogen CI from .travis to GitHub Actions. It shouldn't affect the way you run the pipeline but merging this will make seasonal-flu similar to zika, measles, and dengue CI. Feel free to msg me if you have any questions. Otherwise for more details:

See:

The GitHub Action has been customized for a flu build, may be harmonized with
zika, measles, dengue builds later.

nextstrain build --docker . auspice/flu_seasonal_h3n2_ha_12y.json auspice/flu_seasonal_h3n2_ha_12y_tip-frequencies.json

Testing

Or see the nextstrain build output in:

See:

 - nextstrain/zika#16
 - nextstrain/zika#17
 - nextstrain/.github#13

The GitHub Action has been customized for a flu build, may be harmonized with
zika, measles, dengue builds later
@j23414 j23414 self-assigned this Apr 4, 2022
.github/workflows/ci.yaml Outdated Show resolved Hide resolved
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Nice! Fast work!

Co-authored-by: Thomas Sibley <tom@zulutango.org>
@j23414 j23414 requested a review from tsibley April 5, 2022 14:56
@j23414 j23414 merged commit cd6b8b6 into nextstrain:master Apr 5, 2022
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3 participants