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Dev > main: first release#1

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Merged

matthdsm merged 35 commits intomainnf-cmgg/sampletracking:mainfrom devnf-cmgg/sampletracking:devCopy head branch name to clipboardMar 21, 2024

+19,108-1,057

Commits

Commits on Mar 8, 2024

• update modules

  matthdsm

  committed
  64643d5

• intermediary commit

  matthdsm

  committed
  70cd48f

• fix linting

  matthdsm

  committed
  1438d79

• almost done

  matthdsm

  committed
  99b9b37

• finished workflow

  matthdsm

  committed
  085289a

• linting + prettier

  matthdsm

  committed
  93ac951

Commits on Mar 11, 2024

• finish adding support for bam idex

  matthdsm

  committed
  c88ce5d

• add RG to bwa

  matthdsm

  committed
  7a2c77c

• add haplotype maps

  matthdsm

  committed
  580d4f7

• Update nextflow_schema.json

  Show description for 441416f
  

  matthdsm

  and

  nvnieuwk

  authored
  441416f

• Update assets/schema_input.json

  Show description for 5c05814
  

  matthdsm

  and

  nvnieuwk

  authored
  5c05814

• add torque config

  matthdsm

  committed
  eaebd87

• update test samplesheet

  matthdsm

  committed
  1598a1c

Commits on Mar 12, 2024

• add samplesheet generation script

  matthdsm

  committed
  93378b1

• add a test

  matthdsm

  committed
  492bed4

• script bugfix

  matthdsm

  committed
  8f8ae34

• remove print statement

  matthdsm

  committed
  8815991

• add support for multiple input dirs

  matthdsm

  committed
  450bc6a

Commits on Mar 13, 2024

• output snp reads as cram

  matthdsm

  committed
  08885c6

Commits on Mar 19, 2024

• add fai input

  matthdsm

  committed
  556b0f2

• update config

  matthdsm

  committed
  8cc16dd

Commits on Mar 20, 2024

• patch crosscheckfingerprints

  matthdsm

  committed
  e5edcdc

• update test data urls

  matthdsm

  committed
  1d3e0cf

• bugfixes

  matthdsm

  committed
  9a15158

• workaround for MQC bug

  matthdsm

  committed
  f6eeb6d

• more workaround

  matthdsm

  committed
  4549e5a

• add nf-test

  matthdsm

  committed
  5552ce7

Commits on Mar 21, 2024

• try to fix CI

  matthdsm

  committed
  d19c52d

• update modules

  matthdsm

  committed
  82b33b1

• prettier

  matthdsm

  committed
  1309913

• add utils dir to editorconfig ignore

  matthdsm

  committed
  2509bcd

• fix linting ci

  matthdsm

  committed
  9c8a17e

• fix nf-core linting

  matthdsm

  committed
  7ae4401

• fix csv formatting

  matthdsm

  committed
  ead4b12

• fix tests

  matthdsm

  committed
  bbea163