Merge pull request #126 from healx/fix_singularity_download2

Add spaces to satisfy nf-core download for singularity
nf-core · May 2, 2023 · 07543be · 07543be
2 parents ebc90fc + 0032fef
commit 07543be
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Showing 8 changed files with 12 additions and 10 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,11 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Added`
 
-- [[#124](https://github.com/nf-core/differentialabundance/pull/124)] - Template update for nf-core/tools v2.8 ([@pinin4fjords](https://github.com/pinin4fjords), review by )
+- [[#124](https://github.com/nf-core/differentialabundance/pull/124)] - Template update for nf-core/tools v2.8 ([@pinin4fjords](https://github.com/pinin4fjords), review by [@jasmezz](https://github.com/jasmezz))
 
 ### `Fixed`
 
 - [[#116](https://github.com/nf-core/differentialabundance/issues/116)] - Skip outlier detection with low replication ([@pinin4fjords](https://github.com/pinin4fjords), review by [@nvnieuwk](https://github.com/nvnieuwk))
+- [[#122](https://github.com/nf-core/differentialabundance/pull/126)] - Add spaces to satisfy nf-core download for singularity ([@pinin4fjords](https://github.com/pinin4fjords), review by [@WackerO](https://github.com/WackerO))
 
 ## v1.2.0 - 2023-04-19
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -298,7 +298,7 @@ process {
 
     withName: RMARKDOWNNOTEBOOK {
         conda = "bioconda::r-shinyngs=1.7.2"
-        container = { "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.2--r42hdfd78af_0':'quay.io/biocontainers/r-shinyngs:1.7.2--r42hdfd78af_0' }" }
+        container = { "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.2--r42hdfd78af_0' : 'quay.io/biocontainers/r-shinyngs:1.7.2--r42hdfd78af_0' }" }
         publishDir = [
             path: { "${params.outdir}/report" },
             mode: params.publish_dir_mode,

diff --git a/modules.json b/modules.json
@@ -62,22 +62,22 @@
                     },
                     "shinyngs/app": {
                         "branch": "master",
-                        "git_sha": "443d681b050358f4dbc70ddd3700b60565311c48",
+                        "git_sha": "7be616acb9436d748631011420d3c8f73c181cbe",
                         "installed_by": ["modules"]
                     },
                     "shinyngs/staticdifferential": {
                         "branch": "master",
-                        "git_sha": "443d681b050358f4dbc70ddd3700b60565311c48",
+                        "git_sha": "7be616acb9436d748631011420d3c8f73c181cbe",
                         "installed_by": ["modules"]
                     },
                     "shinyngs/staticexploratory": {
                         "branch": "master",
-                        "git_sha": "443d681b050358f4dbc70ddd3700b60565311c48",
+                        "git_sha": "7be616acb9436d748631011420d3c8f73c181cbe",
                         "installed_by": ["modules"]
                     },
                     "shinyngs/validatefomcomponents": {
                         "branch": "master",
-                        "git_sha": "443d681b050358f4dbc70ddd3700b60565311c48",
+                        "git_sha": "7be616acb9436d748631011420d3c8f73c181cbe",
                         "installed_by": ["modules"]
                     },
                     "untar": {

diff --git a/modules/nf-core/shinyngs/app/main.nf b/modules/nf-core/shinyngs/app/main.nf
diff --git a/modules/nf-core/shinyngs/staticdifferential/main.nf b/modules/nf-core/shinyngs/staticdifferential/main.nf
diff --git a/modules/nf-core/shinyngs/staticexploratory/main.nf b/modules/nf-core/shinyngs/staticexploratory/main.nf
diff --git a/modules/nf-core/shinyngs/validatefomcomponents/main.nf b/modules/nf-core/shinyngs/validatefomcomponents/main.nf
diff --git a/nextflow.config b/nextflow.config
@@ -306,6 +306,7 @@ profiles {
     test_nogtf { includeConfig 'conf/test_nogtf.config' }
     test_full { includeConfig 'conf/test_full.config' }
     affy { includeConfig 'conf/affy.config' }
+    rnaseq { includeConfig 'conf/rnaseq.config' }
     test_affy { includeConfig 'conf/test_affy.config' }
 }