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Replace tags strategy with implicit 'tags in test' strategy #253

Merged
merged 22 commits into from
Jan 29, 2024
Merged

Replace tags strategy with implicit 'tags in test' strategy #253

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61e7662
Replace tag strategy for testing
adamrtalbot Jan 18, 2024
34baed6
Remove all tags.yml files
adamrtalbot Jan 18, 2024
a6c34fc
Tag order changed
adamrtalbot Jan 18, 2024
76095d3
Replace tag logic in Github Action testing workflow
adamrtalbot Jan 18, 2024
c325d8d
Fixup CI
adamrtalbot Jan 18, 2024
fe432bc
Correct UTILS_NEXTFLOW_PIPELINE tag
adamrtalbot Jan 18, 2024
bcae51a
ECLint
adamrtalbot Jan 18, 2024
b1b117d
Use PIPELINE tag
adamrtalbot Jan 19, 2024
7d88962
Add exclusion statments for linting files
adamrtalbot Jan 19, 2024
c36a8aa
Add renamed files as deleted and added
adamrtalbot Jan 19, 2024
412b059
Add another debugging step
adamrtalbot Jan 19, 2024
2f6a78a
Revert "Use PIPELINE tag"
adamrtalbot Jan 19, 2024
f28a336
Use PIPELINE tag
adamrtalbot Jan 19, 2024
401f91d
Add files_yaml stuff for checking all
adamrtalbot Jan 19, 2024
6cdff1c
Add debug step
adamrtalbot Jan 19, 2024
d490e6a
Refine pipeline and 'all' test rules
adamrtalbot Jan 19, 2024
00c2ea0
Add shared tag to pipeline level tests
adamrtalbot Jan 19, 2024
4d2d566
Remove shared yaml anchor because I think it isn't needed
adamrtalbot Jan 19, 2024
6c00433
Use collect and confirm strategy for tests
adamrtalbot Jan 22, 2024
bc25627
Tag tidy based on review comments
adamrtalbot Jan 23, 2024
8946e2d
Merge branch 'dev' into nftest_new_tags_strategy
adamrtalbot Jan 26, 2024
cb4f0e6
Update tags for utils_nfcore_fetchngs_pipeline subworkflow
adamrtalbot Jan 26, 2024
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4 changes: 1 addition & 3 deletions subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test
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Expand Up @@ -3,9 +3,7 @@ nextflow_function {

name "Test Functions"
script "subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf"
tag 'subworkflows'
tag 'utils_nfcore_fetchngs_pipeline'
tag 'subworkflows/utils_nfcore_fetchngs_pipeline'
tag "UTILS_NFCORE_FETCHNGS_PIPELINE"
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@maxulysse is this the right tag? Too late on a Friday to confirm. Please check on Monday 😆

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yes


test("Function isSraId") {

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4 changes: 1 addition & 3 deletions ...rkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.test
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Expand Up @@ -3,9 +3,7 @@ nextflow_workflow {
name "Test Workflow PIPELINE_COMPLETION"
script "subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf"
workflow "PIPELINE_COMPLETION"
tag 'subworkflows'
tag 'utils_nfcore_fetchngs_pipeline'
tag 'subworkflows/utils_nfcore_fetchngs_pipeline'
tag "PIPELINE_COMPLETION"

test("Should run") {

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4 changes: 1 addition & 3 deletions .../local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test
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Expand Up @@ -3,9 +3,7 @@ nextflow_workflow {
name "Test Workflow PIPELINE_INITIALISATION"
script "subworkflows/local/utils_nfcore_fetchngs_pipeline/main.nf"
workflow "PIPELINE_INITIALISATION"
tag 'subworkflows'
tag 'utils_nfcore_fetchngs_pipeline'
tag 'subworkflows/utils_nfcore_fetchngs_pipeline'
tag 'PIPELINE_INITIALISATION'

test("Should run") {

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2 changes: 0 additions & 2 deletions subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/tags.yml
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