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chore(deps): Manually bump pypints
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edmundmiller committed Dec 23, 2024
1 parent 10f9dfc commit 8c1ccf2
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Showing 3 changed files with 6 additions and 6 deletions.
2 changes: 1 addition & 1 deletion modules/nf-core/pints/caller/environment.yml
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Expand Up @@ -11,4 +11,4 @@ dependencies:
- pip: # FIXME https://github.com/nf-core/modules/issues/5814
# NOTE PINTS isn't adding conda builds and is a few versions behind.
# renovate: datasource=pypi depName=pypints
- pypints==1.1.13
- pypints==1.1.15
4 changes: 2 additions & 2 deletions modules/nf-core/pints/caller/main.nf
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Expand Up @@ -5,8 +5,8 @@ process PINTS_CALLER {
conda "${moduleDir}/environment.yml"
// NOTE Stopped publishing at 1.1.9 https://quay.io/repository/biocontainers/pypints?tab=tags
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f1/f1a9e30012e1b41baf9acd1ff94e01161138d8aa17f4e97aa32f2dc4effafcd1/data' :
'community.wave.seqera.io/library/pybedtools_bedtools_htslib_pip_pypints:39699b96998ec5f6' }"
'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/3e/3e16d0837ec2c28760a4567b621ec4516bd780dfa8df5601eba73358a814e8c8/data' :
'community.wave.seqera.io/library/pybedtools_bedtools_htslib_pip_pypints:47d773fa19345f15' }"

input:
tuple val(meta), path(bam, arity: '1'), val(chr_name)
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6 changes: 3 additions & 3 deletions modules/nf-core/pints/caller/tests/main.nf.test.snap
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
"content": [
{
"PINTS_CALLER": {
"pints": "1.1.13"
"pints": "1.1.15"
}
}
],
Expand Down Expand Up @@ -34,7 +34,7 @@
"test_chr7_1_unidirectional_peaks.bed",
{
"PINTS_CALLER": {
"pints": "1.1.13"
"pints": "1.1.15"
}
}
],
Expand Down Expand Up @@ -67,7 +67,7 @@
"test_all_1_unidirectional_peaks.bed",
{
"PINTS_CALLER": {
"pints": "1.1.13"
"pints": "1.1.15"
}
}
],
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