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Automatically rename input files in cellranger module #3537

Merged
merged 16 commits into from
Jul 1, 2023
Merged

Automatically rename input files in cellranger module #3537

merged 16 commits into from
Jul 1, 2023

Commits on Jun 20, 2023

  1. add README

    @grst
    grst committed Jun 20, 2023
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  2. Implement cellranger autorename

    @grst
    grst committed Jun 20, 2023
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  3. Fix container paths

    @grst
    grst committed Jun 20, 2023
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  4. Various fixes

    @grst
    grst committed Jun 20, 2023
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  5. Merge branch 'master' into cellranger-multiflowcell

    @grst
    grst authored Jun 20, 2023
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  6. Revert "Fix container paths" 

    This reverts commit 4163e2b.
    @grst
    grst committed Jun 20, 2023
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  7. Merge branch 'master' into cellranger-multiflowcell

    @klkeys
    klkeys authored Jun 20, 2023
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Commits on Jun 21, 2023

  1. Update modules/nf-core/cellranger/count/templates/cellranger_count.py 

    Co-authored-by: Kevin L. Keys <klkeys@users.noreply.github.com>
    @grst @klkeys
    grst and klkeys authored Jun 21, 2023
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  2. Apply suggestions from code review 

    Co-authored-by: Kevin L. Keys <klkeys@users.noreply.github.com>
    @grst @klkeys
    grst and klkeys authored Jun 21, 2023
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  3. Merge branch 'master' into cellranger-multiflowcell

    @grst
    grst authored Jun 21, 2023
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  4. Include container registry

    @grst
    grst committed Jun 21, 2023
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Commits on Jun 26, 2023

  1. Update modules/nf-core/cellranger/count/main.nf 

    Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io>
    @grst @maxulysse
    grst and maxulysse authored Jun 26, 2023
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  2. Merge branch 'master' into cellranger-multiflowcell

    @grst
    grst authored Jun 26, 2023
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Commits on Jul 1, 2023

  1. Merge branch 'master' into cellranger-multiflowcell

    @grst
    grst authored Jul 1, 2023
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  2. Merge branch 'master' into cellranger-multiflowcell

    @grst
    grst authored Jul 1, 2023
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  3. Update documentation

    @grst
    grst committed Jul 1, 2023
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