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Update tiddit to v3.6.1 #3663

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merged 2 commits into from
Jul 23, 2023
Merged

Update tiddit to v3.6.1 #3663

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a3d76b6
Update tiddit to v3.6.1
asp8200 Jul 21, 2023
1dbf60f
Merge branch 'master' into update_tiddit
asp8200 Jul 23, 2023
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6 changes: 3 additions & 3 deletions modules/nf-core/tiddit/cov/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@ process TIDDIT_COV {
tag "$meta.id"
label 'process_low'

conda "bioconda::tiddit=3.3.2"
conda "bioconda::tiddit=3.6.1"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' :
'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }"
'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' :
'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }"

input:
tuple val(meta), path(input)
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6 changes: 3 additions & 3 deletions modules/nf-core/tiddit/sv/main.nf
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Expand Up @@ -2,10 +2,10 @@ process TIDDIT_SV {
tag "$meta.id"
label 'process_medium'

conda "bioconda::tiddit=3.3.2"
conda "bioconda::tiddit=3.6.1"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' :
'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }"
'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' :
'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }"

input:
tuple val(meta), path(input), path(input_index)
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8 changes: 4 additions & 4 deletions tests/modules/nf-core/tiddit/sv/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
- path: output/tiddit/test.ploidies.tab
md5sum: c69e73fe090b260d379205935c64b63c
- path: output/tiddit/test.vcf
md5sum: 6e045e4e03729dd0f03e2b6d2193ed88
md5sum: 2ff97cdcd328c498fdb5aace82bc11e3

- name: tiddit sv test_tiddit_sv_bam_no_bwa
command: nextflow run ./tests/modules/nf-core/tiddit/sv -entry test_tiddit_sv_bam_no_bwa -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/tiddit/sv/nextflow.config
Expand All @@ -18,7 +18,7 @@
- path: output/tiddit/test.ploidies.tab
md5sum: c69e73fe090b260d379205935c64b63c
- path: output/tiddit/test.vcf
md5sum: 9e03f9ef4eda29ef748c67dc293235b3
md5sum: f28d5d5e1a27117e8820d82afc09a4ec

- name: tiddit sv test_tiddit_sv_cram
command: nextflow run ./tests/modules/nf-core/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/tiddit/sv/nextflow.config
Expand All @@ -29,7 +29,7 @@
- path: output/tiddit/test.ploidies.tab
md5sum: 13c4762ede32d319e8582cf7d6d77b71
- path: output/tiddit/test.vcf
md5sum: 4ec60aa26e0f055ce51d3fb84fb40cc0
md5sum: b778ea5e390bf3c8f140a92ab6ae1231

- name: tiddit sv test_tiddit_sv_cram_no_bwa
command: nextflow run ./tests/modules/nf-core/tiddit/sv -entry test_tiddit_sv_cram_no_bwa -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/tiddit/sv/nextflow.config
Expand All @@ -40,4 +40,4 @@
- path: output/tiddit/test.ploidies.tab
md5sum: 13c4762ede32d319e8582cf7d6d77b71
- path: output/tiddit/test.vcf
md5sum: 6d0ae57587bd2af0603d52d993053523
md5sum: f6f06ffba6df0aecdd1974775a05cbe6