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Added .ngc support for sratools fasterqdump and prefetch #4303
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Looks good. I think you can drop one level of conditionals, since a missing file will just end in the final else
clause anyway, but it's certainly fine like this.
ping @maxulysse to the rescue :D - this will be useful for nf-core/fetchngs#238 too |
ok, so as far as I can tell, the pair end tests are not working, but I'm fairly sure it's unrelated to your PR @alexblaessle, I'll have a look and try to come up with a separate PR to fix that so that we can merge your PR. |
#4355 will solve the tests, sorry about that |
Thanks for all the help @apeltzer @maxulysse @Midnighter |
PR checklist
Closes #XXX
versions.yml
file.label
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware