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6a2ae55
Add new input channel for premade seqid2map file
jfy133 Feb 28, 2025
b72b5d7
Add extra tests for using custom seqid2map file
jfy133 Feb 28, 2025
9fff2c6
Merge branch 'master' into master
jfy133 Feb 28, 2025
49fbd6a
Apply suggestions from code review
jfy133 Feb 28, 2025
f29620f
Update modules/nf-core/kraken2/build/tests/main.nf.test
jfy133 Mar 1, 2025
729db41
Merge branch 'nf-core:master' into master
jfy133 Mar 6, 2025
ad73302
Merge branch 'nf-core:master' into master
jfy133 Apr 7, 2025
e781f79
Merge branch 'nf-core:master' into master
jfy133 Apr 25, 2025
a1a127a
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 May 16, 2025
e67e7c9
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 May 16, 2025
98cbd85
Merge branch 'nf-core:master' into master
jfy133 Aug 14, 2025
87bd1bf
Merge branch 'nf-core:master' into master
jfy133 Aug 20, 2025
e63b317
Merge branch 'nf-core:master' into master
jfy133 Aug 25, 2025
9198628
Merge branch 'nf-core:master' into master
jfy133 Aug 28, 2025
d8755fa
Merge branch 'nf-core:master' into master
jfy133 Sep 1, 2025
9073f32
Merge branch 'nf-core:master' into master
jfy133 Sep 11, 2025
477d606
Merge branch 'nf-core:master' into master
jfy133 Sep 15, 2025
e032474
Merge branch 'nf-core:master' into master
jfy133 Sep 21, 2025
7d43bd9
Merge branch 'nf-core:master' into master
jfy133 Sep 27, 2025
2d22b7b
Merge branch 'nf-core:master' into master
jfy133 Oct 4, 2025
3ecd5fb
Merge branch 'nf-core:master' into master
jfy133 Oct 4, 2025
f868f4a
Merge branch 'nf-core:master' into master
jfy133 Oct 26, 2025
6b374d7
Merge branch 'nf-core:master' into master
jfy133 Nov 6, 2025
007285d
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 Nov 6, 2025
ef5230e
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 Nov 11, 2025
ddc7b0c
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 Nov 12, 2025
a051134
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 Nov 13, 2025
8ce5d08
Merge branch 'master' of github.com:jfy133/nf-core-modules
jfy133 Dec 3, 2025
69775c2
Make RGI modules syntax compliant
jfy133 Jan 14, 2026
51ff7a2
Merge branch 'master' into rgi-strict-syntax
jfy133 Jan 14, 2026
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4 changes: 2 additions & 2 deletions modules/nf-core/rgi/cardannotation/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,8 @@ process RGI_CARDANNOTATION {

output:
path ("card_database_processed"), emit: db
env RGI_VERSION, emit: tool_version
env DB_VERSION, emit: db_version
env 'RGI_VERSION', emit: tool_version
env 'DB_VERSION', emit: db_version
path "versions.yml", emit: versions

when:
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4 changes: 2 additions & 2 deletions modules/nf-core/rgi/main/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,8 @@ process RGI_MAIN {
tuple val(meta), path("*.json"), emit: json
tuple val(meta), path("*.txt"), emit: tsv
tuple val(meta), path("temp/"), emit: tmp
env RGI_VERSION, emit: tool_version
env DB_VERSION, emit: db_version
env 'RGI_VERSION', emit: tool_version
env 'DB_VERSION', emit: db_version
path "versions.yml", emit: versions

when:
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