Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove duplicate entries from probands and upd_children in meta #420

Merged
merged 3 commits into from
Sep 4, 2023
Merged

Remove duplicate entries from probands and upd_children in meta #420

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
93b4732
remove duplicate probands and children in meta
ramprasadn Sep 4, 2023
06f717c
update changelog
ramprasadn Sep 4, 2023
3241886
Update raredisease.nf
ramprasadn Sep 4, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Make target bed file optional for WGS mode (Issue [#375](https://github.com/nf-core/raredisease/issues/375)) [#395](https://github.com/nf-core/raredisease/pull/395)
- Added constraints to block the pipeline from running CollectWgsMetrics on WES samples [#396](https://github.com/nf-core/raredisease/pull/396)
- Updated modules from nf-core [#412](https://github.com/nf-core/raredisease/pull/412)
- If present, remove duplicate entries in probands and upd_children in the meta. [#420](https://github.com/nf-core/raredisease/pull/420)

### `Updated`

Expand Down
4 changes: 2 additions & 2 deletions workflows/raredisease.nf
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -650,8 +650,8 @@ def create_case_channel(List rows) {

case_info.father = father
case_info.mother = mother
case_info.probands = probands
case_info.upd_children = upd_children
case_info.probands = probands.unique()
case_info.upd_children = upd_children.unique()
case_info.id = rows[0].case_id

return case_info
Expand Down