Code

Dev -> master for 3.13.2 release#1128

Code

Merged

pinin4fjords merged 36 commits intomasternf-core/rnaseq:masterfrom devnf-core/rnaseq:devCopy head branch name to clipboardNov 21, 2023

+167-88

Commits

Commits on Nov 20, 2023

• [skip ci] overhaul tximport.r

  pinin4fjords

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  5b99b9b

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• Fix formatting etc in tximport script

  pinin4fjords

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  5f1826d

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• update workflow files for new tximport script

  pinin4fjords

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  489bcb4

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• appease eclint

  pinin4fjords

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  a9a831c

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• appease eclint

  pinin4fjords

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• Ensure pseudoaligner is set if pseudoalignment is not skipped

  pinin4fjords

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• Update changelog

  pinin4fjords

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  10d8086

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• restore script executability

  pinin4fjords

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  6bc74b6

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• correct typo

  pinin4fjords

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• Fix tower yml

  pinin4fjords

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• [skip ci] bump version in config

  pinin4fjords

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• Move release to minor version, include tximport PR

  pinin4fjords

  committed
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• [skip ci] Back to patch release

  pinin4fjords

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• fix: remove GTF_FILTER.out.versions

  rhr-cosyne

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• docs: update CHANGELOG

  RHReynolds

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• docs: move update to dev

  RHReynolds

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• Fix error message

  pinin4fjords

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• Fix CHANGELOG.md

  pinin4fjords

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• [automated] Fix linting with Prettier

  nf-core-bot

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• Merge pull request #1126 from RHReynolds/fix-skip-gtf

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• Merge branch 'dev' into ensure_notnull_pseudo

  pinin4fjords

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• [automated] Fix linting with Prettier

  nf-core-bot

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• Merge branch 'ensure_notnull_pseudo' of github.com:nf-core/rnaseq into ensure_notnull_pseudo

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• Add credits

  pinin4fjords

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• Enlarge the sampling range for column determination in FilterGTF script.

  MatthiasZepper

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• Prettier on Markdown documents.

  MatthiasZepper

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• New version of Prettier, new changes to Markdown. Love it....not.

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• Update CHANGELOG.md

  pinin4fjords

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• Merge pull request #1127 from MatthiasZepper/FilterGTF_enlage_sample

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• Merge branch 'dev' into ensure_notnull_pseudo

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Commits on Nov 21, 2023

• [skip ci] Add Jon to script credits

  pinin4fjords

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• actually don't skip ci

  pinin4fjords

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• Merge pull request #1123 from nf-core/improve_tximport

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• [skipci] Update CHANGELOG.md

  drpatelh

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• Always check --skip_pseudo_alignment and --pseudo_aligner are set

  drpatelh

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• Merge pull request #1124 from nf-core/ensure_notnull_pseudo

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