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Deploy dev branch to crazy-corgi #560

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79d1535
Template update for nf-core/tools version 3.0.0
nf-core-bot Oct 8, 2024
56e023f
Template update for nf-core/tools version 3.0.1
nf-core-bot Oct 9, 2024
69969cf
Template update for nf-core/tools version 3.0.2
nf-core-bot Oct 11, 2024
226abd9
resolve the conflicts
LilyAnderssonLee Oct 17, 2024
ff4d28f
remove max_cpu from test.config
LilyAnderssonLee Oct 17, 2024
f3ef6aa
update schema wit new release
LilyAnderssonLee Oct 18, 2024
5e90741
add exists:true to the sechma to check the file path
LilyAnderssonLee Oct 18, 2024
a9af810
change db_path format back to the original value path in schema_database
LilyAnderssonLee Oct 18, 2024
9e20ff1
update the type of run_accession into string and integer
LilyAnderssonLee Oct 22, 2024
88c9f46
Update CITATIONS.md
LilyAnderssonLee Oct 22, 2024
2900ae2
Update conf/modules.config
LilyAnderssonLee Oct 22, 2024
b0c1154
address comments from James
LilyAnderssonLee Oct 22, 2024
340b0af
Update nextflow.config
LilyAnderssonLee Oct 22, 2024
05b743f
Add Lili as co-author
LilyAnderssonLee Oct 22, 2024
fb38fb7
Fix CI to run each test separately
jfy133 Oct 24, 2024
353188d
Update main.nf
LilyAnderssonLee Oct 24, 2024
f7c6176
Update .nf-core.yml
LilyAnderssonLee Oct 24, 2024
dbabb5d
[automated] Fix code linting
nf-core-bot Oct 24, 2024
fe84cc3
Fix mOTUs if/else statemetn
jfy133 Oct 24, 2024
00067f5
update configs and database schema
LilyAnderssonLee Oct 24, 2024
e34437b
Merge pull request #545 from nf-core/nf-core-template-merge-3.0.2
LilyAnderssonLee Oct 24, 2024
8262e0a
Add darkmode version of metromap
jfy133 Oct 24, 2024
93aa499
Merge pull request #548 from nf-core/darkmode-diagram
jfy133 Oct 24, 2024
6c6cd8c
Fix darkmode diagram
jfy133 Oct 31, 2024
2e6f37d
refactor: prepare the additional prefixes input
Midnighter Oct 31, 2024
a1a8289
chore: update krakenuniq/preloadedkrakenuniq
Midnighter Nov 5, 2024
c0311a1
fix: create always unique prefix
Midnighter Nov 6, 2024
30fc22a
fix: make prefix unique across PE and SE
Midnighter Nov 21, 2024
163d600
Update CHANGELOG.md
jfy133 Nov 21, 2024
b2cac44
Merge pull request #549 from nf-core/darkmode-diagram
jfy133 Nov 21, 2024
3022cd2
Update CHANGELOG.md
jfy133 Nov 21, 2024
e58a59c
Merge pull request #550 from nf-core/update-krakenuniq
jfy133 Nov 21, 2024
51b8acb
update nonpareil/curve
LilyAnderssonLee Nov 22, 2024
4da7342
update CHANGELOG.md
LilyAnderssonLee Nov 22, 2024
7d261e8
Merge pull request #552 from nf-core/nonpareil_curve_update
LilyAnderssonLee Nov 22, 2024
716dd78
bump the version
LilyAnderssonLee Nov 25, 2024
42479b0
update changelog
LilyAnderssonLee Nov 25, 2024
1a27aaa
Merge pull request #553 from nf-core/pre_patch_bump_v
LilyAnderssonLee Nov 25, 2024
05e4f2e
Move the modules.config line below the base.config line
LilyAnderssonLee Nov 28, 2024
2a64aed
update configs
LilyAnderssonLee Nov 28, 2024
acd85cc
Merge pull request #556 from nf-core/patch_release_fix
LilyAnderssonLee Nov 28, 2024
0af416a
Merge pull request #554 from nf-core/dev
LilyAnderssonLee Nov 28, 2024
803f928
Bump the version after patch release v1.2.1
LilyAnderssonLee Nov 28, 2024
79055cd
Merge pull request #557 from LilyAnderssonLee/post_release_bump
jfy133 Nov 28, 2024
bbd0815
Template update for nf-core/tools version 3.1.0
nf-core-bot Dec 12, 2024
b6abc21
resolve the template updates conflicts
LilyAnderssonLee Dec 12, 2024
15ebdec
Update main.nf
LilyAnderssonLee Dec 12, 2024
be44921
update taxprofiler.nf
LilyAnderssonLee Dec 12, 2024
34cf51b
remove unused functions in subworkflows/local/utils_nfcore_taxprofile…
LilyAnderssonLee Dec 17, 2024
cd526a1
remove genomes definition from schema
LilyAnderssonLee Dec 17, 2024
35bf598
update nextflow_schema.json
LilyAnderssonLee Dec 17, 2024
14cc312
Update nextflow.config: remove emails
LilyAnderssonLee Dec 17, 2024
b280ccb
update nextflow.config
LilyAnderssonLee Dec 19, 2024
4d14b16
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
7b59380
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
1e377c0
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
50ca9c6
Update docs/usage.md
LilyAnderssonLee Dec 19, 2024
1a9062a
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
1b8dce3
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
2b50c34
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
be0e916
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
d5fcd74
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
a5fc4e4
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
4f81446
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
6caf426
Update nextflow.config
LilyAnderssonLee Dec 19, 2024
e41ed10
Merge pull request #558 from nf-core/nf-core-template-merge-3.1.0
LilyAnderssonLee Dec 19, 2024
4946d78
Update centrifuge to fix CONDA bug
jfy133 Dec 19, 2024
bb61c8f
Merge branch 'dev' into fix-centrifuge-conda
jfy133 Dec 19, 2024
ec47fd0
Update CHANGELOG.md
jfy133 Dec 19, 2024
2564db7
Merge pull request #561 from nf-core/fix-centrifuge-conda
jfy133 Dec 19, 2024
9b0e463
Bump the version before the patch release v.1.2.2
LilyAnderssonLee Dec 19, 2024
a81eed0
correct the format
LilyAnderssonLee Dec 19, 2024
728aafc
reformat the multiqc_config.yml
LilyAnderssonLee Dec 19, 2024
8b4ec22
update CHANGELOG.md
LilyAnderssonLee Dec 20, 2024
6a9da1a
Merge pull request #562 from nf-core/pre-release_vbump
LilyAnderssonLee Dec 20, 2024
8c40f2a
Template update for nf-core/tools version 3.1.0
nf-core-bot Dec 20, 2024
4191a11
Template update for nf-core/tools version 3.1.1
nf-core-bot Dec 20, 2024
7ec45d0
resolve the conflicts
LilyAnderssonLee Jan 2, 2025
7f4a027
correct main branch into master
LilyAnderssonLee Jan 2, 2025
8f21774
correct the formate
LilyAnderssonLee Jan 2, 2025
594f022
update CITATIONS
LilyAnderssonLee Jan 2, 2025
6bd275b
prettier modules.json
LilyAnderssonLee Jan 2, 2025
43c0259
Update the CHANGELOG.md
LilyAnderssonLee Jan 2, 2025
e903a80
Update nextflow_schema.json
LilyAnderssonLee Jan 3, 2025
e71095e
Merge pull request #565 from nf-core/nf-core-template-merge-3.1.1
LilyAnderssonLee Jan 3, 2025
e35d04f
Test fix for downloading
sofstam Jan 9, 2025
e34c7a4
Check if the fix works when opening PR against dev
sofstam Jan 9, 2025
a22afb2
Remove the dev from branches
sofstam Jan 9, 2025
6843bdf
Test new fix
sofstam Jan 9, 2025
b4e9985
Merge pull request #566 from sofstam/download_pipeline_fix
sofstam Jan 10, 2025
6be6184
Use profile variable instead of hardcoding docker
jfy133 Jan 14, 2025
c16ea83
Merge pull request #567 from nf-core/fix-release-tests-for-condasingu…
jfy133 Jan 14, 2025
320f6f2
Update CHANGELOG.md
jfy133 Jan 15, 2025
26e610c
Post-release bump version
sofstam Jan 15, 2025
4f49fde
Update CHANGELOG.md
sofstam Jan 15, 2025
2dea5b1
Prettier
sofstam Jan 15, 2025
575ef87
Merge branch 'bump_version_1.3.0' of https://github.com/nf-core/taxpr…
sofstam Jan 15, 2025
7f5a785
[automated] Fix code linting
nf-core-bot Jan 15, 2025
071bcfb
Merge pull request #568 from nf-core/bump_version_1.3.0
sofstam Jan 15, 2025
64dcb04
Template update for nf-core/tools version 3.1.2
nf-core-bot Jan 20, 2025
898866f
Merge branch 'dev' into nf-core-template-merge-3.1.2
sofstam Jan 23, 2025
ac960d4
Update nextflow.config
sofstam Jan 23, 2025
a33a73f
Update nextflow.config
sofstam Jan 23, 2025
f2226be
Update zenodo
sofstam Jan 23, 2025
3d54880
Update nextflow.config
sofstam Jan 23, 2025
8b62db7
Update README.md
jfy133 Jan 23, 2025
b8a42de
Apply suggestions from code review
jfy133 Jan 23, 2025
34c5079
Merge pull request #569 from nf-core/nf-core-template-merge-3.1.2
sofstam Jan 23, 2025
622585a
Template update for nf-core/tools version 3.2.0
nf-core-bot Jan 27, 2025
b524cb0
Merge branch 'dev' into nf-core-template-merge-3.2.0
sofstam Jan 28, 2025
f11fd27
Merge pull request #571 from nf-core/nf-core-template-merge-3.2.0
jfy133 Jan 28, 2025
22380d6
Improve docs for taxpasta related flags
jfy133 Jan 30, 2025
7415c81
Merge pull request #573 from nf-core/better-docs
jfy133 Jan 30, 2025
ec1ac99
Update CHANGELOG.md
jfy133 Jan 30, 2025
c3a6b58
Merge pull request #575 from nf-core/changelog-for-docschagnes
jfy133 Feb 5, 2025
4484e71
Fix keyword in nextflow_schema.json
mashehu Feb 13, 2025
612a94c
update changelog
mashehu Feb 13, 2025
24933cc
Merge pull request #578 from nf-core/fix-schema-keyword
mashehu Feb 13, 2025
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Update CHANGELOG.md
  • Loading branch information
jfy133 authored Jan 15, 2025
commit 320f6f205fb2143aa3211f889ac5080643bd146f
2 changes: 1 addition & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.2.2 - Bouncy Basenji Patch [2024-01-13]
## v1.2.2 - Bouncy Basenji Patch [2024-01-15]

### `Added`