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Commits on Oct 8, 2024

• Template update for nf-core/tools version 3.0.0

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• Template update for nf-core/tools version 3.0.1

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Commits on Oct 18, 2024

• update schema wit new release

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• change db_path format back to the original value path in schema_database

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Commits on Oct 22, 2024

• update the type of run_accession into string and integer

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Commits on Oct 24, 2024

• Fix CI to run each test separately

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• Merge pull request #545 from nf-core/nf-core-template-merge-3.0.2

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• Add darkmode version of metromap

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• Merge pull request #548 from nf-core/darkmode-diagram

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Commits on Oct 31, 2024

• Fix darkmode diagram

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• refactor: prepare the additional prefixes input

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Commits on Nov 5, 2024

• chore: update krakenuniq/preloadedkrakenuniq

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• fix: create always unique prefix

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• fix: make prefix unique across PE and SE

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Commits on Nov 22, 2024

• update nonpareil/curve

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Commits on Nov 25, 2024

• bump the version

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Commits on Nov 28, 2024

• Move the modules.config line below the base.config line

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• Bump the version after patch release v1.2.1

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• Merge pull request #557 from LilyAnderssonLee/post_release_bump

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Commits on Dec 12, 2024

• Template update for nf-core/tools version 3.1.0

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• Update main.nf

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• update taxprofiler.nf

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Commits on Dec 17, 2024

• remove unused functions in subworkflows/local/utils_nfcore_taxprofiler_pipeline/main.nf

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• remove genomes definition from schema

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• Update nextflow.config: remove emails

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• Merge pull request #558 from nf-core/nf-core-template-merge-3.1.0

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• Update centrifuge to fix CONDA bug

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• Merge pull request #561 from nf-core/fix-centrifuge-conda

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• Bump the version before the patch release v.1.2.2

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• correct the format

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• update CHANGELOG.md

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• Merge pull request #562 from nf-core/pre-release_vbump

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• Template update for nf-core/tools version 3.1.0

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• Template update for nf-core/tools version 3.1.1

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Commits on Jan 2, 2025

• resolve the conflicts

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• correct main branch into master

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• correct the formate

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• update CITATIONS

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• Merge pull request #565 from nf-core/nf-core-template-merge-3.1.1

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• Test fix for downloading

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• Check if the fix works when opening PR against dev

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• Test new fix

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• Merge pull request #566 from sofstam/download_pipeline_fix

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• Use profile variable instead of hardcoding docker

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• Merge pull request #567 from nf-core/fix-release-tests-for-condasingularity

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• Post-release bump version

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• Prettier

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• Merge branch 'bump_version_1.3.0' of https://github.com/nf-core/taxprofiler into bump_version_1.3.0

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• [automated] Fix code linting

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• Merge pull request #568 from nf-core/bump_version_1.3.0

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• Template update for nf-core/tools version 3.1.2

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• Merge branch 'dev' into nf-core-template-merge-3.1.2

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• Merge pull request #569 from nf-core/nf-core-template-merge-3.1.2

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• Template update for nf-core/tools version 3.2.0

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• Merge branch 'dev' into nf-core-template-merge-3.2.0

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• Merge pull request #571 from nf-core/nf-core-template-merge-3.2.0

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• Improve docs for taxpasta related flags

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