Switch to markdown based API and linting error docs #6297

Job	Run time
Get test file matrix	4s
setup (3.8, ubuntu-latest)	1s
setup (3.11, ubuntu-latest)	1s
setup (3.8, ubuntu-20.04)	1s
Run test_utils.py with Python 3.8 on ubuntu-20.04	1m 30s
Run test_test_utils.py with Python 3.8 on ubuntu-20.04	1m 23s
Run test_sync.py with Python 3.8 on ubuntu-20.04	1m 48s
Run test_subworkflows.py with Python 3.8 on ubuntu-20.04	5m 43s
Run test_schema.py with Python 3.8 on ubuntu-20.04	1m 43s
Run test_refgenie.py with Python 3.8 on ubuntu-20.04	1m 14s
Run test_params_file.py with Python 3.8 on ubuntu-20.04	1m 9s
Run test_modules.py with Python 3.8 on ubuntu-20.04	3m 54s
Run test_list.py with Python 3.8 on ubuntu-20.04	1m 7s
Run test_lint_utils.py with Python 3.8 on ubuntu-20.04	1m 3s
Run test_lint.py with Python 3.8 on ubuntu-20.04	2m 9s
Run test_licenses.py with Python 3.8 on ubuntu-20.04	1m 2s
Run test_launch.py with Python 3.8 on ubuntu-20.04	1m 35s
Run test_download.py with Python 3.8 on ubuntu-20.04	1m 29s
Run test_create_logo.py with Python 3.8 on ubuntu-20.04	1m 4s
Run test_create.py with Python 3.8 on ubuntu-20.04	1m 36s
Run test_components.py with Python 3.8 on ubuntu-20.04	10m 28s
Run test_cli.py with Python 3.8 on ubuntu-20.04	1m 11s
Run test_bump_version.py with Python 3.8 on ubuntu-20.04	1m 34s
coverage	44s
	43m 33s

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