Update templates to use nf-core/setup-nextflow v2 #6457
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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