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Update CI to use nf-core/setup-nextflow v2 #5496

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Update CI to use nf-core/setup-nextflow v2

Update CI to use nf-core/setup-nextflow v2 #5496

Run time

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Job Run time
RunTestWorkflow (23.04.0)
1m 42s
RunTestWorkflow (latest-everything)
1m 51s
3m 33s