fix pytests

tests/modules/module_test.py

@@ -28,18 +28,15 @@ def test_modules_test_no_name_no_prompts(self):
  assert "Tool name not provided and prompts deactivated." in str(excinfo.value)
 
 
-def test_modules_test_no_proper_path(self):
+def test_modules_test_no_installed_modules(self):
  """Test the check_inputs() function - raise UserWarning because installed modules were not found"""
  cwd = os.getcwd()
- with pytest.raises(SystemError):
- assert nf_core.modules.ModulesTest(".", False, "")
-
-
-def test_modules_test_all_modules_listed(self):
- """Test the check_inputs() function - raise UserWarning because installed modules were not found"""
- cwd = os.getcwd()
- meta_builder = nf_core.modules.ModulesTest(".", False, "")
+ os.chdir(self.nfcore_modules)
+ meta_builder = nf_core.modules.ModulesTest(None, False, "")
+ meta_builder.module_names["modules"] = None
+ meta_builder.repo_type = "modules"
  with pytest.raises(UserWarning) as excinfo:
  meta_builder._check_inputs()
  os.chdir(cwd)
- assert "No installed modules were found." in str(excinfo.value)
+ print(excinfo.value)
+ assert "No installed modules were found" in str(excinfo.value)

tests/test_modules.py

@@ -109,8 +109,8 @@ def test_modulesrepo_class(self):
  )
  from .modules.module_test import (
  test_modules_test_check_inputs,
+ test_modules_test_no_installed_modules,
  test_modules_test_no_name_no_prompts,
- test_modules_test_no_proper_path,
  )
  from .modules.remove import (
  test_modules_remove_trimgalore,