Merge pull request #2819 from MillironX/feature/setup-nextflow-v2-ci

Update CI to use nf-core/setup-nextflow v2
nf-core · Mar 1, 2024 · 11db3b4 · 11db3b4
2 parents 721bab5 + 50404a3
commit 11db3b4
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Showing 7 changed files with 7 additions and 6 deletions.
diff --git a/.github/actions/create-lint-wf/action.yml b/.github/actions/create-lint-wf/action.yml
@@ -17,7 +17,7 @@ runs:
 
     # Set up Nextflow
     - name: Install Nextflow
-      uses: nf-core/setup-nextflow@v1
+      uses: nf-core/setup-nextflow@v2
       with:
         version: ${{ matrix.NXF_VER }}
 

diff --git a/.github/workflows/create-test-lint-wf-template.yml b/.github/workflows/create-test-lint-wf-template.yml
@@ -72,7 +72,7 @@ jobs:
           pip install .
 
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
         with:
           version: latest-everything
 

diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml
@@ -59,7 +59,7 @@ jobs:
           pip install .
 
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
         with:
           version: ${{ matrix.NXF_VER }}
 

diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -119,7 +119,7 @@ jobs:
         run: echo "date=$(date +'%Y-%m')" >> $GITHUB_ENV
 
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
 
       - name: Look if nf-test is already installed and write to env variable
         id: check-nftest

diff --git a/.github/workflows/rich-codex.yml b/.github/workflows/rich-codex.yml
@@ -15,7 +15,7 @@ jobs:
           cache-dependency-path: setup.py
 
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
 
       - name: Cache nf-test installation
         id: cache-software

diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml
@@ -67,7 +67,7 @@ jobs:
           pip install .
 
       - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
         with:
           version: "latest-everything"
 

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,7 @@
 
 ### General
 
+- Update CI to use nf-core/setup-nextflow v2
 - Changelog bot: handle also patch version before dev suffix ([#2820](https://github.com/nf-core/tools/pull/2820))
 
 ## [v2.13.1 - Tin Puppy Patch](https://github.com/nf-core/tools/releases/tag/2.13) - [2024-02-29]