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update file exists docstring
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nvnieuwk committed Aug 27, 2024
1 parent 330e43c commit 3600db7
Showing 1 changed file with 1 addition and 6 deletions.
7 changes: 1 addition & 6 deletions nf_core/pipelines/lint/files_exist.py
Original file line number Diff line number Diff line change
Expand Up @@ -87,6 +87,7 @@ def files_exist(self) -> Dict[str, List[str]]:
lib/Workflow.groovy
lib/WorkflowMain.groovy
lib/WorkflowPIPELINE.groovy
lib/nfcore_external_java_deps.jar
parameters.settings.json
pipeline_template.yml # saving information in .nf-core.yml
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Expand All @@ -98,12 +99,6 @@ def files_exist(self) -> Dict[str, List[str]]:
.travis.yml
Files that *must not* be present if a certain entry is present in ``nextflow.config``:
.. code-block:: bash
lib/nfcore_external_java_deps.jar # if "nf-validation" is in nextflow.config
.. tip:: You can configure the ``nf-core pipelines lint`` tests to ignore any of these checks by setting
the ``files_exist`` key as follows in your ``.nf-core.yml`` config file. For example:
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