Merge pull request #447 from apeltzer/dev

Fix #446

CHANGELOG.md

@@ -9,6 +9,7 @@
 ### Template
 
 * Fixed incorrect paths in iGenomes config as described in issue [#418](https://github.com/nf-core/tools/issues/418)
+* Fixed [incorrect usage of non-existant parameter](https://github.com/nf-core/tools/issues/446) in the template
 * Add UCSC genomes to `igenomes.config` and add paths to all genome indices
 * Change `maxMultiqcEmailFileSize` parameter to `max_multiqc_email_size`
 * Export conda environment in Docker file [#349](https://github.com/nf-core/tools/issues/349)

nf_core/pipeline-template/{{cookiecutter.name_noslash}}/main.nf

@@ -78,14 +78,14 @@ if (!(workflow.runName ==~ /[a-z]+_[a-z]+/)) {
     custom_runName = workflow.runName
 }
 
-if (workflow.profile == 'awsbatch') {
+if (workflow.profile.contains('awsbatch')) {
     // AWSBatch sanity checking
     if (!params.awsqueue || !params.awsregion) exit 1, "Specify correct --awsqueue and --awsregion parameters on AWSBatch!"
     // Check outdir paths to be S3 buckets if running on AWSBatch
     // related: https://github.com/nextflow-io/nextflow/issues/813
     if (!params.outdir.startsWith('s3:')) exit 1, "Outdir not on S3 - specify S3 Bucket to run on AWSBatch!"
     // Prevent trace files to be stored on S3 since S3 does not support rolling files.
-    if (workflow.tracedir.startsWith('s3:')) exit 1, "Specify a local tracedir or run without trace! S3 cannot be used for tracefiles."
+    if (params.tracedir.startsWith('s3:')) exit 1, "Specify a local tracedir or run without trace! S3 cannot be used for tracefiles."
 }
 
 // Stage config files