Merge pull request #3087 from GallVp/lint/highmem

nf-core · Jul 30, 2024 · 94bf2c3 · 94bf2c3
2 parents baa1a3c + c18d9cd
commit 94bf2c3
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Showing 3 changed files with 10 additions and 1 deletion.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -14,6 +14,7 @@
 
 - Fix linting fail on nfcore_external_java_deps if nf_schema is used ([#2976](https://github.com/nf-core/tools/pull/2976))
 - Conda module linting: Include package name in log file ([#3014](https://github.com/nf-core/tools/pull/3014))
+- Fix module linting warning for process_high_memory ([#3086](https://github.com/nf-core/tools/issues/3086))
 
 ### Download
 

diff --git a/nf_core/components/create.py b/nf_core/components/create.py
@@ -236,6 +236,7 @@ def _get_module_structure_components(self):
             "process_medium",
             "process_high",
             "process_long",
+            "process_high_memory",
         ]
         if self.process_label is None:
             log.info(

diff --git a/nf_core/modules/lint/main_nf.py b/nf_core/modules/lint/main_nf.py
@@ -423,7 +423,14 @@ def check_process_section(self, lines, registry, fix_version, progress_bar):
 
 
 def check_process_labels(self, lines):
-    correct_process_labels = ["process_single", "process_low", "process_medium", "process_high", "process_long"]
+    correct_process_labels = [
+        "process_single",
+        "process_low",
+        "process_medium",
+        "process_high",
+        "process_long",
+        "process_high_memory",
+    ]
     all_labels = [line.strip() for line in lines if line.lstrip().startswith("label ")]
     bad_labels = []
     good_labels = []