Merge branch 'dev' of https://github.com/nf-core/tools into dev

nf_core/modules/lint/main_nf.py

@@ -302,6 +302,15 @@ def check_process_section(self, lines, fix_version, progress_bar):
  self.failed.append(
  ("container_links", "Too many double quotes found when specifying containers", self.main_nf)
  )
+ # lint more than one container in the same line
+ if ("https://containers" in l or "https://depot" in l) and ("biocontainers/" in l or "quay.io/" in l):
+ self.warned.append(
+ (
+ "container_links",
+ "Docker and Singularity containers specified in the same line. Only first one checked.",
+ self.main_nf,
+ )
+ )
  # Try to connect to container URLs
  if url is None:
  continue