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Network Outage / CTRL+C crash subsequent pipeline module updates #1850

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apeltzer opened this issue Sep 29, 2022 · 0 comments
Closed

Network Outage / CTRL+C crash subsequent pipeline module updates #1850

apeltzer opened this issue Sep 29, 2022 · 0 comments
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@apeltzer
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Description of the bug

Also described / discussed here on Slack, I've had issues updating a nf-core module in a pipeline, as my network outage a couple of days ago probably caused the modules to not being checked out properly.

https://nfcore.slack.com/archives/CE5LG7WMB/p1664446308790179

Would be great to either have a --force option that completely repulls the entire repository or deletes the current one & pulls again.

Command used and terminal output

nf-core modules update multiqc

##Broke

System information

Linux on HPC
Nextflow 22.04.5
@apeltzer apeltzer added the bug Something isn't working label Sep 29, 2022
ewels added a commit to ewels/nf-core-tools that referenced this issue Sep 29, 2022
@ewels
Modules: If something is wrong with the local repo cache, offer to de…
b097143 
…lete it and try again

Closes nf-core#1850
@ewels ewels mentioned this issue Sep 29, 2022
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@ewels ewels closed this as completed in 1be5d6b Oct 4, 2022
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@apeltzer