Pass a list of modules/subworkflows(files) to nf-core modules lint

[edmundmiller]

Description of feature

I was working on nf-core/modules#6286 last week.

I really wanted to avoid using path-filter and having the whole separate step logic for the linting.

I think we could offload the changed files to pre-commit, and create pre-commit hooks for nf-core/tools. I think it would be pretty slick for pipelines as well(I know I don't run nf-core lint often enough personally)

The only issue I had was the way pre-commit passes files. It will pass nf-core modules lint modules/nf-core/bowtie/align/main.nf modules/nf-core/bowtie/build/main.nf modules/nf-core/fastqc/main.nf ... which currently doesn't work.