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nf-core modules create - new --conda_name cli flag #988

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ewels opened this issue Apr 6, 2021 · 0 comments
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nf-core modules create - new --conda_name cli flag #988

ewels opened this issue Apr 6, 2021 · 0 comments
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command line tools Anything to do with the cli interfaces high-priority

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@ewels
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ewels commented Apr 6, 2021

In #961 @Erkison added a really nice feature where the user is prompted for a new name to find a bioconda package that is different from the nf-core/modules tool name. This kicks in if nf-core modules create cannot find a tool on bioconda by that name.

I suggested that we should probably also make this available through the cli in addition to just a prompt, and of course the need for this has come around sooner than expected (as it always does), courtesy of @drpatelh

So - feature request is to add a new flag --conda_name into the command which is passed through the code and used to search bioconda if given, without using any interactive prompts.

@ewels ewels added command line tools Anything to do with the cli interfaces high-priority labels Apr 6, 2021
@KevinMenden KevinMenden mentioned this issue Apr 6, 2021
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@KevinMenden KevinMenden self-assigned this Apr 6, 2021
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