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obtain module suggestions from installed modules #1624

Merged
merged 22 commits into from
Jul 5, 2022
Merged

obtain module suggestions from installed modules #1624

merged 22 commits into from
Jul 5, 2022

Commits on Jun 3, 2022

  1. obtain module suggestions from installed modules

    @mirpedrol
    mirpedrol committed Jun 3, 2022
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  2. fail when not in nf-core/modules

    @mirpedrol
    mirpedrol committed Jun 3, 2022
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  3. add functionality test

    @mirpedrol
    mirpedrol committed Jun 3, 2022
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  4. update CHANGELOG

    @mirpedrol
    mirpedrol committed Jun 3, 2022
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  5. allow running from a directory other than nf-core/modules

    @mirpedrol
    mirpedrol committed Jun 3, 2022
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  6. modify pytest

    @mirpedrol
    mirpedrol committed Jun 3, 2022
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Commits on Jun 28, 2022

  1. Initialise variables to None 

    Co-authored-by: Erik Danielsson <53212377+ErikDanielsson@users.noreply.github.com>
    @mirpedrol @ErikDanielsson
    mirpedrol and ErikDanielsson authored Jun 28, 2022
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  2. Merge branch 'dev' into module-selection

    @mirpedrol
    mirpedrol authored Jun 28, 2022
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  3. Merge branch 'dev' into module-selection

    @mirpedrol
    mirpedrol authored Jun 28, 2022
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  4. retrieve installed modules with get_pipeline_modules

    @mirpedrol
    mirpedrol committed Jun 28, 2022
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  5. validate test folder structure

    @mirpedrol
    mirpedrol committed Jun 28, 2022
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  6. remove comments

    @mirpedrol
    mirpedrol committed Jun 28, 2022
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  7. modify test

    @mirpedrol
    mirpedrol committed Jun 28, 2022
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  8. remove unused variables

    @mirpedrol
    mirpedrol committed Jun 28, 2022
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Commits on Jun 30, 2022

  1. add option to retrieve local modules if current directory is a pipeline

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  2. Merge branch 'dev' into module-selection

    @mirpedrol
    mirpedrol authored Jun 30, 2022
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  3. Apply suggestions from code review 

    Co-authored-by: Erik Danielsson <53212377+ErikDanielsson@users.noreply.github.com>
    @mirpedrol @ErikDanielsson
    mirpedrol and ErikDanielsson authored Jun 30, 2022
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Commits on Jul 1, 2022

  1. Update nf_core/modules/module_test.py

    @ErikDanielsson
    ErikDanielsson authored Jul 1, 2022
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  2. revert adapting command to local modules

    @mirpedrol
    mirpedrol committed Jul 1, 2022
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  3. change .cache/nf-core to .cache/nfcore

    @mirpedrol
    mirpedrol committed Jul 1, 2022
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  4. fix retrieve repo type

    @mirpedrol
    mirpedrol committed Jul 1, 2022
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  5. fix pytests

    @mirpedrol
    mirpedrol committed Jul 1, 2022
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