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nf-core / tools Public

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obtain module suggestions from installed modules#1624

Merged

ewels merged 22 commits intonf-core:devnf-core/tools:devfrom mirpedrol:module-selectionmirpedrol/tools:module-selectionCopy head branch name to clipboard

Jul 5, 2022

+65-11

Conversation Commits22 (22)Checks Files changed

Commits

Commits on Jun 3, 2022

obtain module suggestions from installed modules
mirpedrol
committed
fail when not in nf-core/modules
mirpedrol
committed
add functionality test
mirpedrol
committed
update CHANGELOG
mirpedrol
committed
allow running from a directory other than nf-core/modules
mirpedrol
committed
modify pytest
mirpedrol
committed

Commits on Jun 28, 2022

Initialise variables to None

mirpedrol
and
ErikDanielsson
authored
Merge branch 'dev' into module-selection
mirpedrol
authored
Merge branch 'dev' into module-selection
mirpedrol
authored
retrieve installed modules with get_pipeline_modules
mirpedrol
committed
validate test folder structure
mirpedrol
committed
remove comments
mirpedrol
committed
modify test
mirpedrol
committed
remove unused variables
mirpedrol
committed

Commits on Jun 30, 2022

add option to retrieve local modules if current directory is a pipeline
mirpedrol
committed
Merge branch 'dev' into module-selection
mirpedrol
authored
Apply suggestions from code review

mirpedrol
and
ErikDanielsson
authored

Commits on Jul 1, 2022

Update nf_core/modules/module_test.py
ErikDanielsson
authored
revert adapting command to local modules
mirpedrol
committed
change .cache/nf-core to .cache/nfcore
mirpedrol
committed
fix retrieve repo type
mirpedrol
committed
fix pytests
mirpedrol
committed

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