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use packaging instead of deprecated distutils Version classes #1735

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merged 3 commits into from
Aug 9, 2022
Merged

use packaging instead of deprecated distutils Version classes #1735

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d173186
use packaging instead of deprecated distutils Version classes
fabianegli Aug 5, 2022
85d5fbb
remove last distutils usage
fabianegli Aug 6, 2022
b2b967e
put link in parentheses
fabianegli Aug 6, 2022
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -43,6 +43,7 @@
- Add `no_git=True` when creating a new pipeline and initialising a git repository is not needed in `nf-core lint` and `nf-core bump-version` ([#1709](https://github.com/nf-core/tools/pull/1709))
- Move `strip_ansi_code` function in lint to `utils.py`
- Simplify control flow and don't use equality comparison for `None` and booleans
- Replace use of the deprecated `distutils` Version object with that from `packaging` ([#1735](https://github.com/nf-core/tools/pull/1735))

### Modules

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4 changes: 2 additions & 2 deletions nf_core/utils.py
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Expand Up @@ -15,7 +15,6 @@
import subprocess
import sys
import time
from distutils.version import StrictVersion

import git
import prompt_toolkit
Expand All @@ -24,6 +23,7 @@
import requests_cache
import rich
import yaml
from packaging.version import Version
from rich.live import Live
from rich.spinner import Spinner

Expand Down Expand Up @@ -76,7 +76,7 @@ def check_if_outdated(current_version=None, remote_version=None, source_url="htt
response = requests.get(source_url, timeout=3)
remote_version = re.sub(r"[^0-9\.]", "", response.text)
# Check if we have an available update
is_outdated = StrictVersion(remote_version) > StrictVersion(current_version)
is_outdated = Version(remote_version) > Version(current_version)
return (is_outdated, current_version, remote_version)


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