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Add (customisable) 'method description' MultiQC section to pipeline template #1749

Merged
merged 24 commits into from
Sep 9, 2022
Merged

Add (customisable) 'method description' MultiQC section to pipeline template #1749

merged 24 commits into from
Sep 9, 2022

Commits on Aug 14, 2022

  1. Add new custom groovy library to generate a methods section for MultiQC

    @jfy133
    jfy133 committed Aug 14, 2022
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  2. Changelog

    @jfy133
    jfy133 committed Aug 14, 2022
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  3. Add to schema

    @jfy133
    jfy133 committed Aug 14, 2022
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Commits on Aug 17, 2022

  1. Update nf_core/pipeline-template/assets/methods_description_template.yml 

    Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
    @jfy133 @mirpedrol
    jfy133 and mirpedrol authored Aug 17, 2022
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  2. Apply suggestions from code review 

    Co-authored-by: Phil Ewels <phil@seqera.io>
    @jfy133 @ewels
    jfy133 and ewels authored Aug 17, 2022
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Commits on Aug 23, 2022

  1. Apply suggestions from code review 

    Co-authored-by: Phil Ewels <phil@seqera.io>
    @jfy133 @ewels
    jfy133 and ewels authored Aug 23, 2022
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  2. Update nf_core/pipeline-template/assets/methods_description_template.yml

    @jfy133
    jfy133 authored Aug 23, 2022
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  3. Add conditional DOI

    @jfy133
    jfy133 committed Aug 23, 2022
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  4. Merge branch 'method-description' of github.com:jfy133/nf-core-tools … 

    …into method-description
    @jfy133
    jfy133 committed Aug 23, 2022
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Commits on Aug 25, 2022

  1. Merge branch 'dev' into method-description

    @jfy133
    jfy133 authored Aug 25, 2022
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  2. Generate new screengrabs with rich-codex

    @github-actions
    github-actions[bot] committed Aug 25, 2022
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Commits on Sep 8, 2022

  1. Update MultiQC and insert config correctly

    @jfy133
    jfy133 committed Sep 8, 2022
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  2. Update CHANGELOG.md

    @jfy133
    jfy133 authored Sep 8, 2022
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  3. Improve message re logo

    @jfy133
    jfy133 committed Sep 8, 2022
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  4. Merge branch 'dev' of github.com:jfy133/nf-core-tools into dev

    @jfy133
    jfy133 committed Sep 8, 2022
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  5. Update CHANGELOG.md

    @jfy133
    jfy133 authored Sep 8, 2022
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  6. Try adding custom logo path parameter

    @jfy133
    jfy133 committed Sep 8, 2022
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  7. Remove MultiQC logo

    @jfy133
    jfy133 committed Sep 8, 2022
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  8. Remove MultiQC logo from pipeline

    @jfy133
    jfy133 committed Sep 8, 2022
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  9. Re-add logo

    @jfy133
    jfy133 committed Sep 8, 2022
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Commits on Sep 9, 2022

  1. Update nf_core/pipeline-template/assets/methods_description_template.yml 

    Co-authored-by: Phil Ewels <phil@seqera.io>
    @jfy133 @ewels
    jfy133 and ewels authored Sep 9, 2022
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  2. Generate new screengrabs with rich-codex

    @github-actions
    github-actions[bot] committed Sep 9, 2022
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  3. Make DOI notice a condition

    @jfy133
    jfy133 committed Sep 9, 2022
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  4. Merge remote-tracking branch 'origin/dev' into method-description

    @jfy133
    jfy133 committed Sep 9, 2022
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