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Add docker_m1 profile #1942

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merged 5 commits into from
Nov 18, 2022
+9 −0
Merged

Add docker_m1 profile #1942

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852be90
add docker_m1 profile
ggabernet Oct 12, 2022
9264be8
[automated] Fix code linting
nf-core-bot Oct 12, 2022
270acb5
Merge branch 'dev' into dev
mirpedrol Oct 20, 2022
4860579
Apply suggestions from code review
mirpedrol Nov 18, 2022
addf973
Merge branch 'dev' into dev
mirpedrol Nov 18, 2022
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@
- Add codespaces template ([#1957](https://github.com/nf-core/tools/pull/1957))
- Check that the workflow name provided with a template doesn't contain dashes ([#1822](https://github.com/nf-core/tools/pull/1822))
- `nextflow run <pipeline> --version` will now print the workflow version from the manifest and exit ([#1951](https://github.com/nf-core/tools/pull/1951))
- Add profile for running `docker` with the ARM chips (including Apple silicon).

### Linting

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8 changes: 8 additions & 0 deletions nf_core/pipeline-template/nextflow.config
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Expand Up @@ -110,6 +110,14 @@ profiles {
shifter.enabled = false
charliecloud.enabled = false
}
docker_arm {
docker.enabled = true
singularity.enabled = false
podman.enabled = false
shifter.enabled = false
charliecloud.enabled = false
docker.runOptions = '-u $(id -u):$(id -g) --platform=linux/amd64'
}
singularity {
singularity.enabled = true
singularity.autoMounts = true
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