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Add command nf-core subworkflows lint #2379

Merged
merged 16 commits into from
Jul 26, 2023
Merged

Add command nf-core subworkflows lint #2379

merged 16 commits into from
Jul 26, 2023

Commits on Jul 20, 2023

  1. restructure modules lint adding components lint

    @mirpedrol
    mirpedrol committed Jul 20, 2023
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Commits on Jul 21, 2023

  1. add nf-core subworkflows lint and main_nf lint test

    @mirpedrol
    mirpedrol committed Jul 21, 2023
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  2. update changelog

    @mirpedrol
    mirpedrol committed Jul 21, 2023
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Commits on Jul 25, 2023

  1. add all subworkflow lint tests: yml, changes, tests, todos, version

    @mirpedrol
    mirpedrol committed Jul 25, 2023
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  2. add subowrkflows lint tests

    @mirpedrol
    mirpedrol committed Jul 25, 2023
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  3. add subworkflows lint API docs

    @mirpedrol
    mirpedrol committed Jul 25, 2023
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  4. add subworkflows lint docs in readme

    @mirpedrol
    mirpedrol committed Jul 25, 2023
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  5. lint all included components tags in meta.yml and test.yml

    @mirpedrol
    mirpedrol committed Jul 25, 2023
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  6. fix some errors

    @mirpedrol
    mirpedrol committed Jul 25, 2023
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Commits on Jul 26, 2023

  1. Apply suggestions from code review 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @mirpedrol @mashehu
    mirpedrol and mashehu authored Jul 26, 2023
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  2. rename section from to

    @mirpedrol
    mirpedrol committed Jul 26, 2023
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  3. add TODO for unifying ModuleLint and SubworkflowLint functions to Com… 

    …ponentLint
    @mirpedrol
    mirpedrol committed Jul 26, 2023
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  4. handle error when subworkflow does not include any components

    @mirpedrol
    mirpedrol committed Jul 26, 2023
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  5. lint all components recursively in test.yml tags

    @mirpedrol
    mirpedrol committed Jul 26, 2023
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  6. improve test message for main_nf_include_used and main_nf_include_ver… 

    …sions tests
    @mirpedrol
    mirpedrol committed Jul 26, 2023
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  7. fix pytests

    @mirpedrol
    mirpedrol committed Jul 26, 2023
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