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use pdiff also on gitpod for nf-test #2640

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merged 4 commits into from
Jan 8, 2024
Merged

use pdiff also on gitpod for nf-test #2640

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e54d268
use pdiff also on gitpod for nf-test
mashehu Jan 8, 2024
0121539
[automated] Update CHANGELOG.md
nf-core-bot Jan 8, 2024
06c6e5f
Merge branch 'dev' into use-pdiff-in-gitpot
mashehu Jan 8, 2024
9b45d58
put changelog comment in correct section
mashehu Jan 8, 2024
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6 changes: 6 additions & 0 deletions .gitpod.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,12 @@ tasks:
- name: unset JAVA_TOOL_OPTIONS
command: |
unset JAVA_TOOL_OPTIONS

- name: Use pdiff for nf-test diff viewing
command: |
export NFT_DIFF="pdiff"
export NFT_DIFF_ARGS="--line-numbers --expand-tabs=2"

vscode:
extensions: # based on nf-core.nf-core-extensionpack
- codezombiech.gitignore # Language support for .gitignore files
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -20,6 +20,7 @@
- Add Ruff linter and formatter replacing Black, isort and pyupgrade ([#2620](https://github.com/nf-core/tools/pull/2620))
- Update pre-commit hook pre-commit/mirrors-mypy to v1.8.0 ([#2630](https://github.com/nf-core/tools/pull/2630))
- Update mshick/add-pr-comment action to v2 ([#2632](https://github.com/nf-core/tools/pull/2632))
- use pdiff also on gitpod for nf-test ([#2640](https://github.com/nf-core/tools/pull/2640))

# [v2.11.1 - Magnesium Dragon Patch](https://github.com/nf-core/tools/releases/tag/2.11) - [2023-12-20]

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4 changes: 4 additions & 0 deletions nf_core/pipeline-template/.gitpod.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,10 @@ tasks:
- name: unset JAVA_TOOL_OPTIONS
command: |
unset JAVA_TOOL_OPTIONS
- name: Use pdiff for nf-test diff viewing
command: |
export NFT_DIFF="pdiff"
export NFT_DIFF_ARGS="--line-numbers --expand-tabs=2"
vscode:
extensions: # based on nf-core.nf-core-extensionpack
- codezombiech.gitignore # Language support for .gitignore files
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