Add support for Click TUI with Trogon

[ewels]

Add support for Trogon - a TUI for the click CLI interface

CleanShot.2024-01-11.at.15.39.14.mp4

[mashehu]

@ewels, can you please allow me to push to your branch? Tried fixing the merge conflicts in the requirements files

[ewels]

@ewels, can you please allow me to push to your branch? Tried fixing the merge conflicts in the requirements files

Should already be allowed?

Anyway, I just fixed it 👍🏻

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (ed15dd3) 73.10% compared to head (a31fa1f) 73.18%.
Report is 4 commits behind head on dev.

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[mashehu]

@nf-core-bot fix linting

[mirpedrol]

LGTM!

Will we be able to replace the pipelines create from this TUI when it is ready? or is the idea to have them in parallel until we adapt all the other commands?

[ewels]

I don't really know yet. In a perfect world, we would somehow have Trogan as part of the larger TUI framework that we're building. But I'm not sure that this will be possible (very likely not).

I just sort of figured that it didn't hurt to add 👀 If we ever get to the point where we have custom TUI interfaces for all commands then we can remove it. I suspect that we will never get there though, and the custom TUI stuff will only be worth investing in for cases where it really adds a lot of value. In which case, this adds a nice halfway-point for all the other commands.

Could do with some nice way to switch between custom TUI and Trogan though. Wonder if we could have a button that closes our TUI and launches the Trogan TUI or something 🤔 (so effectively a button to switch).

[mirpedrol]

Sounds good. Indeed, it doesn't hurt to add it. And we can later try to add this button to switch to Trogan :)