Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline
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# Conflicts: # nf_core/__main__.py
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@nf-core-bot changelog: Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline |
ewels
approved these changes
Jan 24, 2024
nf_core/rocrate.py
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| self.add_main_authors(wf_file) | ||
| wf_file.append_to("programmingLanguage", {"@id": "#nextflow"}) | ||
| # get keywords from nf-core website | ||
| remote_workflows = requests.get("https://nf-co.re/pipelines.json").json()["remote_workflows"] |
mirpedrol
reviewed
Jan 25, 2024
…s datasets with descriptions
…eate # Conflicts: # CHANGELOG.md # nf_core/commands_pipelines.py # nf_core/pipelines/lint_utils.py # nf_core/pipelines/rocrate.py # nf_core/utils.py
# Conflicts: # nf_core/utils.py
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Example crate from the rnaseq pipeline:
ro-crate-metadata.json