Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Dev -> Master for 2.13 #2781

Merged
merged 241 commits into from
Feb 20, 2024
Merged

Dev -> Master for 2.13 #2781

merged 241 commits into from
Feb 20, 2024

Conversation

mashehu
Copy link
Contributor

@mashehu mashehu commented Feb 20, 2024

No description provided.

mashehu and others added 30 commits January 30, 2024 10:28
@mashehu
fix conflicts between editor config and prettier
8d45289
@mashehu
remove trailing whitespace in template
ad20579
@mashehu
automatically rerun actions on github instead of self-hosted
0c9e01a
@mashehu
remove ignored option
61508da
@mashehu
run test_components always on self-hosted runners
2f7b371
@mashehu
add comment explaining runner logic
5ab5597
@mashehu
run sync setup locally to start quicker
e47c05b
@mirpedrol
bump to 2.13dev
b029dea
@mirpedrol
Merge pull request #2721 from mirpedrol/bump-2.13dev
a622eb1 
bump version to 2.13dev
@mashehu
fix ignoring changes in partial template files
5966957
@nf-core-bot
[automated] Update CHANGELOG.md
cffda64
@mashehu
fix changelog
a651445
@mashehu
fix one more path
9e219eb
@mashehu
update ruff for dev tools [skip changelog]
32d3488
@mashehu
update ruff in template and add it to pre-commit step
08e44f3
@nf-core-bot
[automated] Update CHANGELOG.md
c75959f
@mashehu
Merge pull request #2724 from mashehu/update-ruff
06f4e7d 
update ruff for dev tools [skip changelog]
@mashehu
fix docstring
9447625
@mashehu
Update nf_core/pipeline-template/.pre-commit-config.yaml
f189835
@mashehu
Merge branch 'dev' into update-ruff-template
900b0ff
@renovate
Update codecov/codecov-action digest to e0b68c6
59808f2
@nf-core-bot @renovate
[automated] Update CHANGELOG.md
aabbb35
@maxulysse
Update README.md
fe25da0 
need an extra empty line, otherwise html and markdown collide
@nf-core-bot
[automated] Update CHANGELOG.md
b2ee77d
@mashehu
fix changelog
28a2f24
@maxulysse
Merge pull request #2729 from nf-core/maxulysse-patch-4
02eba1d 
Update README.md
@renovate
Pin dependencies
157860c
@renovate
Update pre-commit hook astral-sh/ruff-pre-commit to v0.2.1
bf7d0b5
@nf-core-bot
[automated] Update CHANGELOG.md
7e3ecc5
@mashehu
Merge branch 'dev' of github.com:nf-core/tools into dev
4a060da
nf-core-bot and others added 20 commits February 19, 2024 14:47
@nf-core-bot
[automated] Update CHANGELOG.md
9f56fcb
@mashehu
move also subdirectories during update
2e076d1
@mashehu
bring back lost files
f12aec5
@mashehu
Merge branch 'update-template-modules' of github.com:mashehu/tools in…
87633c1 
…to update-template-modules
@mashehu
fix changelog
749b2ce
@mashehu
bump version to dev -> 2.13
2d380c5
@mashehu
add code review suggestions
e070ebb
@mashehu
update pyproject toml according to ruff 0.2.0
656b0f8
@mashehu
format pyproject.toml file
69e3ece
@mirpedrol
update pipeline template pyproject.toml according to ruff 0.2.0
9951f25
@mashehu
Merge pull request #2779 from mashehu/fix-ruff-setting
e00e528 
Update pyproject.toml for ruff 0.2.0 [skip changelog]
@mirpedrol
add full path of nextflow.config to update files
89a3154
@mashehu @mirpedrol
Update CHANGELOG.md
faee542 
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
@mashehu
Merge pull request #2776 from mashehu/update-template-modules
eae4cca 
update modules in template
@mashehu
Merge pull request #2777 from mashehu/fix-missing-files-in-update
ae5971d 
move also subdirectories during update [skip changelog]
@mashehu @mirpedrol
Update CHANGELOG.md
d95729e 
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
@mirpedrol
update gitpod image to latest
8352dc1
@renovate
chore(deps): update gitpod/workspace-base docker digest to 728e1fa
fdda81d
@nf-core-bot @renovate
[automated] Update CHANGELOG.md
04ff0f2
@mashehu
Merge pull request #2778 from mashehu/bump-version-2_13
189d23a 
bump version to dev -> 2.13
@codecov Codecov
Copy link

codecov bot commented Feb 20, 2024 •
edited
Loading

Codecov Report

Attention: 8 lines in your changes are missing coverage. Please review.

Comparison is base (776089a) 73.52% compared to head (b3fd496) 73.40%.

❗ Current head b3fd496 differs from pull request most recent head f4871ef. Consider uploading reports for the commit f4871ef to get more accurate results

Files Patch % Lines
nf_core/components/create.py 33.33% 4 Missing ⚠️
nf_core/modules/modules_differ.py 60.00% 2 Missing ⚠️
nf_core/components/components_test.py 75.00% 1 Missing ⚠️
nf_core/components/update.py 95.83% 1 Missing ⚠️
Additional details and impacted files

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

mirpedrol
mirpedrol reviewed Feb 20, 2024
View reviewed changes
CHANGELOG.md Outdated Show resolved Hide resolved
CHANGELOG.md Outdated Show resolved Hide resolved
CHANGELOG.md Show resolved Hide resolved
@mashehu mashehu merged commit b51c7d8 into master Feb 20, 2024
36 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@mirpedrol mirpedrol mirpedrol approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
10 participants
@mashehu @mirpedrol @nf-core-bot @maxulysse @MatthiasZepper @gregorysprenger @drpatelh @apeltzer @ewels @RaqManzano