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Update CI to use nf-core/setup-nextflow v2 #2819

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merged 3 commits into from
Mar 1, 2024
Merged

Update CI to use nf-core/setup-nextflow v2 #2819

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49c6bed
chore: Update ci to use nf-core/setup-nextflow v2
MillironX Mar 1, 2024
ae47251
chore: Update CHANGELOG
MillironX Mar 1, 2024
50404a3
Merge branch 'dev' into feature/setup-nextflow-v2-ci
mashehu Mar 1, 2024
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2 changes: 1 addition & 1 deletion .github/actions/create-lint-wf/action.yml
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Expand Up @@ -17,7 +17,7 @@ runs:

# Set up Nextflow
- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
uses: nf-core/setup-nextflow@v2
with:
version: ${{ matrix.NXF_VER }}

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2 changes: 1 addition & 1 deletion .github/workflows/create-test-lint-wf-template.yml
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Expand Up @@ -72,7 +72,7 @@ jobs:
pip install .

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
uses: nf-core/setup-nextflow@v2
with:
version: latest-everything

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2 changes: 1 addition & 1 deletion .github/workflows/create-test-wf.yml
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Expand Up @@ -59,7 +59,7 @@ jobs:
pip install .

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
uses: nf-core/setup-nextflow@v2
with:
version: ${{ matrix.NXF_VER }}

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2 changes: 1 addition & 1 deletion .github/workflows/pytest.yml
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Expand Up @@ -119,7 +119,7 @@ jobs:
run: echo "date=$(date +'%Y-%m')" >> $GITHUB_ENV

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
uses: nf-core/setup-nextflow@v2

- name: Look if nf-test is already installed and write to env variable
id: check-nftest
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2 changes: 1 addition & 1 deletion .github/workflows/rich-codex.yml
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Expand Up @@ -15,7 +15,7 @@ jobs:
cache-dependency-path: setup.py

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
uses: nf-core/setup-nextflow@v2

- name: Cache nf-test installation
id: cache-software
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2 changes: 1 addition & 1 deletion .github/workflows/sync.yml
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Expand Up @@ -67,7 +67,7 @@ jobs:
pip install .

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
uses: nf-core/setup-nextflow@v2
with:
version: "latest-everything"

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,7 @@

### General

- Update CI to use nf-core/setup-nextflow v2
- Changelog bot: handle also patch version before dev suffix ([#2820](https://github.com/nf-core/tools/pull/2820))

## [v2.13.1 - Tin Puppy Patch](https://github.com/nf-core/tools/releases/tag/2.13) - [2024-02-29]
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