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TableInfo: file_describes_collection.tsv
mano-at-sdsc edited this page Oct 11, 2024
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Association between a file and a collection that it describes
If populated, file_describes_collection.tsv
will contain one row for every file that describes an entire collection defined by your program.
All fields are required: this table can be empty (header-row only), but any non-header rows must leave no fields blank.
Some examples:
- If you don't have any files that summarize entire collections, this table should be left empty.
- If you have exactly one file describing each of your collections, this table will have the same number of rows as collection.tsv
- If you have five files summarizing each collection, this table will have five times as many rows as collection.tsv
Field | Field Description | Required? | Field Value Type | Extra Info |
---|---|---|---|---|
file_id_namespace | Identifier namespace for this file [part 1 of 4-component composite primary key] | Required | string | This will be the value of id_namespace in the row in file.tsv corresponding to the file referenced in this row. If your program has not registered multiple CFDE identifier namespaces, this will be exactly the same value for all rows. |
file_local_id | The ID of this file [part 2 of 4-component composite primary key] | Required | string | This will be the value of local_id in the row in file.tsv corresponding to the file referenced in this row. |
collection_id_namespace | Identifier namespace for this collection [part 3 of 4-component composite primary key] | Required | string | This will be the value of id_namespace in the row in collection.tsv corresponding to the collection referenced in this row. If your program has not registered multiple CFDE identifier namespaces, this will be exactly the same value for all rows. |
collection_local_id | The ID of this collection [part 4 of 4-component composite primary key] | Required | string | This will be the value of local_id in the row in collection.tsv corresponding to the collection referenced in this row. |
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Tutorials
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C2M2 Table Guide
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Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv
- disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
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Table Summary