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TableInfo: subject_role_taxonomy.tsv
mano-at-sdsc edited this page Oct 11, 2024
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The subject_role_taxonomy.tsv
table is used to attach taxonomic labels to subjects.
Usage notes:
- Please see the technical docs for a complete discussion of the rules governing the use of this table.
Field | Field Description | Required? | Field Value Type | Extra Info |
---|---|---|---|---|
subject_id_namespace | Identifier namespace for this subject [part 1 of 4-component composite primary key] | Required | string | This will be the value of id_namespace in the row in subject.tsv corresponding to the subject referenced in this row. If your program has not registered multiple CFDE identifier namespaces, this will be exactly the same value for all rows. |
subject_local_id | The ID of this subject [part 2 of 4-component composite primary key] | Required | string | This will be the value of local_id in the row in subject.tsv corresponding to the subject referenced in this row. |
role_id | A CFDE CV term categorizing the role assigned to this organism-level constituent component of this subject [part 3 of 4-component composite primary key] | Required | enum of strings | Table of allowed values |
taxonomy_id | An NCBI Taxonomy Database ID [part 4 of 4-component composite primary key] | Required | string |
NCBI Taxonomy Browser --- Note formatting: be sure to prefix numeric taxon IDs with " NCBI:txid " --- Example (for "9606"): NCBI:txid9606
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Tutorials
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C2M2 Table Guide
-
Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biofluid.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_biofluid.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv
- disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
-
Table Summary