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Merge pull request #293 from obophenotype/issue276-2
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Add new EFO measurement related traits
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@jamesamcl
jamesamcl committed Oct 13, 2023
2 parents 7e388c0 + f8a7cd2 commit 9d8fc39
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4 changes: 2 additions & 2 deletions src/ontology/components/obsoletes.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/components/obsoletes.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-09-07/components/obsoletes.owl>
Annotation(owl:versionInfo "2023-09-07")
<http://purl.obolibrary.org/obo/oba/releases/2023-10-10/components/obsoletes.owl>
Annotation(owl:versionInfo "2023-10-10")

Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000037>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0000039>))
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4 changes: 2 additions & 2 deletions src/ontology/components/synonyms.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/components/synonyms.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-09-07/components/synonyms.owl>
Annotation(owl:versionInfo "2023-09-07")
<http://purl.obolibrary.org/obo/oba/releases/2023-10-10/components/synonyms.owl>
Annotation(owl:versionInfo "2023-10-10")

Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002546>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_0002565>))
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4,036 changes: 3,903 additions & 133 deletions src/ontology/imports/merged_import.owl
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4 changes: 2 additions & 2 deletions src/patterns/data/default/chemical_role_attribute_location.tsv
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Expand Up @@ -5,6 +5,6 @@ OBA:VT0005120 blood growth hormone amount CHEBI:37845 growth hormone PATO:000007
OBA:VT0005418 blood hormone amount CHEBI:24621 hormone PATO:0000070 amount UBERON:0000178 blood
OBA:VT0010269 colostrum hormone amount CHEBI:24621 hormone PATO:0000070 amount UBERON:0001914 colostrum
OBA:VT0010275 milk hormone amount CHEBI:24621 hormone PATO:0000070 amount UBERON:0001913 milk
OBA:2050092 serum metabolite amount CHEBI:25212 metabolite PATO:0000070 amount UBERON:0001977 serum
OBA:2050078 blood metabolite amount CHEBI:25212 metabolite PATO:0000070 amount UBERON:0000178 blood
OBA:2050092 serum metabolite level CHEBI:25212 metabolite PATO:0000070 amount UBERON:0001977 blood serum
OBA:2050078 blood metabolite level CHEBI:25212 metabolite PATO:0000070 amount UBERON:0000178 blood
OBA:2045211 nutrient level in blood CHEBI:33284 nutrient PATO:0000070 amount UBERON:0000178 blood
70 changes: 70 additions & 0 deletions src/patterns/data/default/entity_attribute.tsv
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Expand Up @@ -4271,3 +4271,73 @@ OBA:2045222 basophilic erythroblast count CL:0000549 basophilic erythroblast PAT
OBA:2045223 myeloid leukocyte count CL:0000766 myeloid leukocyte PATO:0000070 amount myeloid white cell count https://orcid.org/0000-0001-8314-2140
OBA:2045224 visceral adipose tissue quantity UBERON:0035818 visceral fat PATO:0000070 amount https://orcid.org/0000-0001-8314-2140
OBA:2045225 blood clotting level UBERON:0010210 blood clot PATO:0000070 amount thrombus formation level https://orcid.org/0000-0001-8314-2140
OBA:2045226 carotid artery diameter UBERON:0005396 carotid artery segment PATO:0001334 diameter https://orcid.org/0000-0001-8314-2140
OBA:2045227 genu of corpus callosum volume UBERON:0015599 genu of corpus callosum PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045228 rostrum of corpus callosum volume UBERON:0015703 rostrum of corpus callosum PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045229 nerve conductivity attribute UBERON:0001021 nerve PATO:0001758 nerve conductivity https://orcid.org/0000-0001-8314-2140
OBA:2045230 growth rate attribute GO:0040007 growth PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045231 height growth attribute GO:0040007 growth PATO:0000119 height https://orcid.org/0000-0001-8314-2140
OBA:2045232 pulmonary artery root diameter UBERON:0002333 pulmonary trunk PATO:0001334 diameter https://orcid.org/0000-0001-8314-2140
OBA:2045233 pulmonary artery diameter UBERON:0002012 pulmonary artery PATO:0001334 diameter https://orcid.org/0000-0001-8314-2140
OBA:2045234 hearing threshold trait GO:0007605 sensory perception of sound PATO:0000152 threshold https://orcid.org/0000-0001-8314-2140
OBA:2045235 blood sedimentation trait CL:0000232 erythrocyte PATO:0001420 buoyancy https://orcid.org/0000-0001-8314-2140
OBA:2045236 granule cell layer dentate gyrus volume UBERON:0005381 dentate gyrus granule cell layer PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045237 dentate gyrus volume UBERON:0000200 gyrus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045238 caudal anterior cingulate cortex volume UBERON:0028715 caudal anterior cingulate cortex PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045239 caudal middle frontal gyrus volume UBERON:0006445 caudal middle frontal gyrus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045240 fusiform gyrus volume UBERON:0002766 fusiform gyrus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045241 lateral occipital cortex volume UBERON:0006114 lateral occipital cortex PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045242 lateral orbital frontal cortex volume UBERON:0022716 lateral orbital frontal cortex PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045243 temporal horn of lateral ventricle volume UBERON:0006091 inferior horn of the lateral ventricle PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045244 hippocampal formation volume UBERON:0002421 hippocampal formation PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045245 hippocampus fimbria volume UBERON:0002310 hippocampus fimbria PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045246 banks of the superior temporal sulcus volume UBERON:0028622 banks of superior temporal sulcus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045247 choroid plexus volume UBERON:0001886 choroid plexus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045248 corpus callosum central volume UBERON:0015510 #N/A PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045249 corpus callosum volume UBERON:0002336 corpus callosum PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045250 isthmus cingulate cortex volume UBERON:0027061 #N/A PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045251 pars orbitalis volume UBERON:0006318 orbitalis muscle PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045252 transverse temporal cortex volume UBERON:0003939 transverse gyrus of Heschl PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045253 ventral diencephalon volume UBERON:0001894 diencephalon PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045254 carotid artery circumferential wall stress UBERON:0005396 carotid artery segment PATO:0001034 strain https://orcid.org/0000-0001-8314-2140
OBA:2045255 pulmonary artery strain UBERON:0002012 pulmonary artery PATO:0001034 strain https://orcid.org/0000-0001-8314-2140
OBA:2045256 multiple keratinocyte carcinoma susceptibility CL:0000312 keratinocyte PATO:0001043 susceptibility toward https://orcid.org/0000-0001-8314-2140
OBA:2045259 urine relative density UBERON:0001088 urine PATO:0001159 concentrated https://orcid.org/0000-0001-8314-2140
OBA:2045260 red blood cell density CL:0000232 erythrocyte PATO:0001164 dense https://orcid.org/0000-0001-8314-2140
OBA:2045261 quality of life UBERON:0000104 life cycle PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045262 hearing process quality GO:0007605 sensory perception of sound PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045263 visual perception quality GO:0007601 visual perception PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045264 optic disc area UBERON:0001783 optic disc PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045265 optic cup area UBERON:0003072 optic cup PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045266 carotid artery wall area attribute UBERON:0037094 wall of common carotid artery PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045267 cerebral cortex area attribute UBERON:0000956 cerebral cortex PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045268 striated muscle fiber area attribute CL:0000737 striated muscle cell PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045269 aortic vascular smooth muscle cell calcification attribute CL:0002539 aortic smooth muscle cell PATO:0001447 calcified https://orcid.org/0000-0001-8314-2140
OBA:2045270 basal ganglia growth attribute UBERON:0002420 basal ganglion PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045271 brain growth attribute UBERON:0000955 brain PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045272 cerebellum growth attribute UBERON:0002037 cerebellum PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045273 cerebral cortex growth attribute UBERON:0000956 cerebral cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045274 prefrontal cortex growth attribute UBERON:0000451 prefrontal cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045275 heart function attribute UBERON:0000948 heart PATO:0001509 functionality https://orcid.org/0000-0001-8314-2140
OBA:2045276 erythrocyte attribute CL:0000232 erythrocyte PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045277 dorsolateral prefrontal cortex functionality attribute UBERON:0009834 dorsolateral prefrontal cortex PATO:0001510 functional https://orcid.org/0000-0001-8314-2140
OBA:2045278 carotid artery stiffness UBERON:0005396 carotid artery segment PATO:0001543 flexibility https://orcid.org/0000-0001-8314-2140
OBA:2045279 number of teeth UBERON:0003672 dentition PATO:0001555 has number of https://orcid.org/0000-0001-8314-2140
OBA:2045280 anterior chamber depth UBERON:0001766 anterior chamber of eyeball PATO:0001595 depth https://orcid.org/0000-0001-8314-2140
OBA:2045281 aortic vascular smooth muscle cell proliferation attribute CL:0002539 aortic smooth muscle cell PATO:0002102 proliferative https://orcid.org/0000-0001-8314-2140
OBA:2045282 facial pigmentation UBERON:0001456 face PATO:0002247 degree of pigmentation https://orcid.org/0000-0001-8314-2140
OBA:2045283 anterior chamber of eyeball pressure UBERON:0001766 anterior chamber of eyeball PATO:0001025 pressure https://orcid.org/0000-0001-8314-2140
OBA:2045284 microglial activation attribute CL:0000129 microglial cell PATO:0002354 active https://orcid.org/0000-0001-8314-2140
OBA:2045285 erosive tooth wear attribute UBERON:0001091 calcareous tooth PATO:0002453 eroding https://orcid.org/0000-0001-8314-2140
OBA:2045286 cortisol secretion attribute GO:0043400 cortisol secretion PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045287 platelet reactivity attribute GO:0030168 platelet activation PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045288 visual memory attribute NBO:0000196 visual memory PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045289 fatty acid desaturase enzyme activity attribute GO:0019395 fatty acid oxidation PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045290 angiotensin converting enzyme activity attribute PR:000001322 angiotensin-converting enzyme PATO:0001414 catalytic activity https://orcid.org/0000-0001-8314-2140
OBA:2045291 cerebrospinal fluid composition attribute UBERON:0001359 cerebrospinal fluid PATO:0000025 composition https://orcid.org/0000-0001-8314-2140
OBA:2045292 sensory perception of taste attribute GO:0050909 sensory perception of taste PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045293 sexual activity behaviour attribute NBO:0000034 sexual activity PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045294 asparaginase activity GO:0006530 asparagine catabolic process PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045295 brain connectivity attribute UBERON:0000955 brain PATO:0000141 structure https://orcid.org/0000-0001-8314-2140
OBA:2045296 attriibute of defense response to other organism GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045328 DNA methylation level GO:0006306 DNA methylation PATO:0002062 physical quality of a process https://orcid.org/0000-0001-8314-2140
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