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Add new EFO measurement related traits #293

Merged
merged 16 commits into from
Oct 13, 2023
Merged

Add new EFO measurement related traits #293

merged 16 commits into from
Oct 13, 2023

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rays22
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@rays22 rays22 commented Sep 27, 2023

This commit intends to update the entity_attribute DOS-DP data table.

If applied, this commit will fix #276.

This commit intends to update the entity_attribute DOS-DP data table.

If applied, this commit will fix #276.
@rays22 rays22 self-assigned this Sep 27, 2023
@rays22 rays22 marked this pull request as draft September 27, 2023 15:01
@rays22 rays22 changed the title Update the entity_attribute DOS-DP data table Update the DOS-DP data tables as needed by EFO/GWAS Sep 27, 2023
@rays22 rays22 changed the title Update the DOS-DP data tables as needed by EFO/GWAS Add new EFO measurement related traits Sep 27, 2023
Update data table response_to_chemical_with_role_stimulus.tsv
If applied, this commit will fix #276.
Update data table response_to_chemical_stimulus_trait.tsv

If applied, this commit will fix #276.
Update data table entity_attribute_location.tsv

If applied, this commit will fix #276.
rays22 added a commit to obophenotype/pro_obo_slim that referenced this pull request Oct 12, 2023
* Also, remove invalid IDs `PR:0000000`, `PR:0000001` and `PR:0000002`.

Addresses obophenotype/bio-attribute-ontology#293
@rays22 rays22 marked this pull request as ready for review October 12, 2023 20:33
OBA:2045293 sexual activity behaviour attribute NBO:0000034 sexual activity PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045294 asparaginase activity GO:0006530 asparagine catabolic process PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045295 brain connectivity attribute UBERON:0000955 brain PATO:0000141 structure https://orcid.org/0000-0001-8314-2140
OBA:2045296 attriibute of defense response to other organism GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
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Typo in "attribute"

@jamesamcl jamesamcl merged commit 9d8fc39 into master Oct 13, 2023
@rays22 rays22 deleted the issue276-2 branch October 13, 2023 15:08
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Map/curate 344 EFO measurement branch terms to OBA traits
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