Merge pull request #318 from obophenotype/new_term_chemical_level

Added new chemical level term
obophenotype · Apr 4, 2024 · cee8a35 · cee8a35
2 parents 31eaf0e + 5eec139
commit cee8a35
Show file tree

Hide file tree

Showing 3 changed files with 13 additions and 4 deletions.
diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/imports/merged_import.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2024-02-21/imports/merged_import.owl>
-Annotation(owl:versionInfo "2024-02-21")
+<http://purl.obolibrary.org/obo/oba/releases/2024-02-27/imports/merged_import.owl>
+Annotation(owl:versionInfo "2024-02-27")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))

diff --git a/src/patterns/data/default/chemical_role_attribute_location.tsv b/src/patterns/data/default/chemical_role_attribute_location.tsv
@@ -8,3 +8,4 @@ OBA:VT0010275	milk hormone amount	CHEBI:24621	hormone	PATO:0000070	amount	UBERON
 OBA:2050092	serum metabolite level	CHEBI:25212	metabolite	PATO:0000070	amount	UBERON:0001977	blood serum
 OBA:2050078	blood metabolite level	CHEBI:25212	metabolite	PATO:0000070	amount	UBERON:0000178	blood
 OBA:2045211	nutrient level in blood	CHEBI:33284	nutrient	PATO:0000070	amount	UBERON:0000178	blood
+OBA:2050419	level of endocrine disruptor in urine	CHEBI:138015	endocrine disruptor	PATO:0000070	amount	UBERON:0001088	urine
diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/oba/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/oba/releases/2024-02-21/patterns/definitions.owl>
-Annotation(owl:versionInfo "2024-02-21"^^xsd:string)
+<http://purl.obolibrary.org/obo/oba/releases/2024-04-04/patterns/definitions.owl>
+Annotation(owl:versionInfo "2024-04-04"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10033>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10112>))
@@ -12640,6 +12640,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050415>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050416>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050417>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050418>))
+Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050419>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060000>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060002>))
@@ -105186,6 +105187,13 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2050418> "voice quality trait"^^xsd:string)
 EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2050418> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001519> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0034681>)))
 
+# Class: <http://purl.obolibrary.org/obo/OBA_2050419> (level of endocrine disruptor in urine)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/chemical_role_attribute_location"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2050419> "The amount of endocrine disruptor when measured in urine."^^xsd:string)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/chemical_role_attribute_location"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2050419> "urine endocrine disruptor amount"^^xsd:string)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2050419> "level of endocrine disruptor in urine"^^xsd:string)
+EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2050419> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_138015>)) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001088>)))))
+
 # Class: <http://purl.obolibrary.org/obo/OBA_2060000> (aggressive behavior towards inanimate objects rate)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2060000> "The rate of a aggressive behavior towards inanimate objects."^^xsd:string)