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Fix or improve labels #295

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merged 5 commits into from
Oct 18, 2023
Merged

Fix or improve labels #295

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124e863
Fix or improve labels
rays22 Oct 13, 2023
ed57eec
Update definitions
rays22 Oct 13, 2023
219f9b9
Update dosdp patterns file
rays22 Oct 13, 2023
448519d
Replace characteristic with attribute
rays22 Oct 17, 2023
b931c27
Update dosdp patterns file
rays22 Oct 17, 2023
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20 changes: 10 additions & 10 deletions src/patterns/data/default/entity_attribute.tsv
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Expand Up @@ -1240,7 +1240,7 @@ OBA:0002278 GO:0030097 hemopoiesis PATO:0002181 displaced
OBA:0002279 UBERON:0008341 columella nasi PATO:0000122 length
OBA:0002280 UBERON:0001456 face PATO:0000052 shape
OBA:0002281 UBERON:0008200 forehead PATO:0000140 position
OBA:0002282 UBERON:0001988 feces PATO:0001548 quality of a liquid
OBA:0002282 wateriness of faeces UBERON:0001988 feces PATO:0001548 quality of a liquid faeces liquidness|wateriness of feces https://orcid.org/0000-0001-8314-2140
OBA:0002283 GO:0030421 defecation PATO:0000044 frequency
OBA:0002284 UBERON:0001165 pyloric antrum PATO:0000141 structure
OBA:0002285 UBERON:0001245 anus PATO:0000136 closure
Expand Down Expand Up @@ -4313,11 +4313,11 @@ OBA:2045266 carotid artery wall area attribute UBERON:0037094 wall of common car
OBA:2045267 cerebral cortex area attribute UBERON:0000956 cerebral cortex PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045268 striated muscle fiber area attribute CL:0000737 striated muscle cell PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045269 aortic vascular smooth muscle cell calcification attribute CL:0002539 aortic smooth muscle cell PATO:0001447 calcified https://orcid.org/0000-0001-8314-2140
OBA:2045270 basal ganglia growth attribute UBERON:0002420 basal ganglion PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045271 brain growth attribute UBERON:0000955 brain PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045272 cerebellum growth attribute UBERON:0002037 cerebellum PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045273 cerebral cortex growth attribute UBERON:0000956 cerebral cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045274 prefrontal cortex growth attribute UBERON:0000451 prefrontal cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045270 basal ganglia growth characteristic UBERON:0002420 basal ganglion PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
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@rays22 Why were 'attribute' terms replaced by 'characteristic'?

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It sound better. It was suggested by James at the meeting last Friday.

OBA:2045271 brain growth characteristic UBERON:0000955 brain PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045272 cerebellum growth characteristic UBERON:0002037 cerebellum PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045273 cerebral cortex growth characteristic UBERON:0000956 cerebral cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045274 prefrontal cortex growth characteristic UBERON:0000451 prefrontal cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045275 heart function attribute UBERON:0000948 heart PATO:0001509 functionality https://orcid.org/0000-0001-8314-2140
OBA:2045276 erythrocyte attribute CL:0000232 erythrocyte PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045277 dorsolateral prefrontal cortex functionality attribute UBERON:0009834 dorsolateral prefrontal cortex PATO:0001510 functional https://orcid.org/0000-0001-8314-2140
Expand All @@ -4329,15 +4329,15 @@ OBA:2045282 facial pigmentation UBERON:0001456 face PATO:0002247 degree of pigme
OBA:2045283 anterior chamber of eyeball pressure UBERON:0001766 anterior chamber of eyeball PATO:0001025 pressure https://orcid.org/0000-0001-8314-2140
OBA:2045284 microglial activation attribute CL:0000129 microglial cell PATO:0002354 active https://orcid.org/0000-0001-8314-2140
OBA:2045285 erosive tooth wear attribute UBERON:0001091 calcareous tooth PATO:0002453 eroding https://orcid.org/0000-0001-8314-2140
OBA:2045286 cortisol secretion attribute GO:0043400 cortisol secretion PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045287 platelet reactivity attribute GO:0030168 platelet activation PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045288 visual memory attribute NBO:0000196 visual memory PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045286 cortisol secretion efficacy GO:0043400 cortisol secretion PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045287 platelet reactivity efficacy GO:0030168 platelet activation PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045288 visual memory characteristic NBO:0000196 visual memory PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045289 fatty acid desaturase enzyme activity attribute GO:0019395 fatty acid oxidation PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045290 angiotensin converting enzyme activity attribute PR:000001322 angiotensin-converting enzyme PATO:0001414 catalytic activity https://orcid.org/0000-0001-8314-2140
OBA:2045291 cerebrospinal fluid composition attribute UBERON:0001359 cerebrospinal fluid PATO:0000025 composition https://orcid.org/0000-0001-8314-2140
OBA:2045292 sensory perception of taste attribute GO:0050909 sensory perception of taste PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045293 sexual activity behaviour attribute NBO:0000034 sexual activity PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045294 asparaginase activity GO:0006530 asparagine catabolic process PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045295 brain connectivity attribute UBERON:0000955 brain PATO:0000141 structure https://orcid.org/0000-0001-8314-2140
OBA:2045296 attriibute of defense response to other organism GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045296 defense response to other organism characteristic GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045328 DNA methylation level GO:0006306 DNA methylation PATO:0002062 physical quality of a process https://orcid.org/0000-0001-8314-2140
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