Remove config TwoPhotonSeries name. Save edit roi status in nwb file. #473
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This was referenced Apr 20, 2023
| @@ -1,33 +1,44 @@ | |||
| import numpy as np | |||
| import os | |||
| from optinist.api.dataclass.dataclass import * | |||
| from .utils import get_im, get_stat0_add_roi, masks_and_traces, save_json_data | |||
| from .utils import get_stat0_add_roi, masks_and_traces, save_json_data | |||
| @@ -1,39 +1,47 @@ | |||
| import numpy as np | |||
| from optinist.api.dataclass.dataclass import * | |||
| from .utils import get_im, save_json_data | |||
| from .utils import save_json_data | |||
There was a problem hiding this comment.
#460 で対応できればと思います
| stat_orig = np.concatenate((stat_orig, np.array([stat0])), axis=0) | ||
| iscell = np.append(iscell, [True]) | ||
| stat_orig = roi_stats(stat_orig, d0[0], d0[1], ly, lx) | ||
| print(type(stat_orig), type(stat0), type(stat_orig[0])) |
| im = np.concatenate((im, array), axis=0) | ||
| im[im == 0] = np.nan | ||
|
|
||
| print(merge_roi) |
quanpython
pushed a commit
that referenced
this pull request
Jun 28, 2023
Remove config TwoPhotonSeries name. Save edit roi status in nwb file.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.