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31 Open 267 Closed
31 Open 267 Closed
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Issues list

add rescale_marginals to CLI
#448 opened Dec 19, 2024 by BenxiaHu
1
cooler cload does not accept .lz4-compressed .pairs files documentation
#410 opened Mar 27, 2024 by bskubi
1
Allow multi enzyme digest enhancement
#401 opened Mar 8, 2024 by nvictus
Biological signal missing from cool files
#385 opened Feb 2, 2024 by NMaziak
2
Store marginals (cis, total) in cooler enhancement
#351 opened Oct 16, 2023 by Phlya
Can't import cooler in aws lambda because multiprocessing is not supported multiprocessing
#329 opened Jun 9, 2023 by pkerpedjiev
3
Upper variance limit to abort balancing? enhancement
#318 opened Mar 29, 2023 by Phlya
cooler zoomify should ensure the base resolution is properly balanced enhancement
#314 opened Feb 9, 2023 by robomics
merge .cool file of individual chromosome question
#293 opened Oct 17, 2022 by chenggang108
1
Can't create cooler at super high resolution multiprocessing
#286 opened Aug 24, 2022 by Phlya
1
INFO:cooler.balance:variance is nan
#262 opened Aug 27, 2021 by aakashsur
1
cooler bioframe dependency internals
#261 opened Aug 24, 2021 by gfudenberg
Can't generate coolerfile with cload at very high resolution (200/400bp) multiprocessing
#260 opened Aug 22, 2021 by gdolsten
1
Check if input bin table is not "tiling" enhancement
#254 opened Apr 19, 2021 by nvictus
testing cooler on capture Hi-C data
#251 opened Apr 16, 2021 by nservant
9
Cooler zoomify issues summary thread multiprocessing
#232 opened Dec 27, 2020 by mimakaev
1
Error in cooler balance when high number of chromsomes bug-hdf5
#226 opened Nov 2, 2020 by lldelisle
1
new edge case for balancing with ignoring diagonals
#211 opened Jul 1, 2020 by sergpolly
Balancing enhancements enhancement help wanted
#210 opened Jun 30, 2020 by nvictus
5 tasks
Better input TSV validation enhancement good first issue
#209 opened Jun 30, 2020 by nvictus
5 tasks
Ignore diagonals in API? api enhancement
#197 opened May 6, 2020 by Phlya
non-symmetric matrix support in pairix loader enhancement
#171 opened Jun 20, 2019 by nvictus
3
suggestions/improvements to the split-apply-combine pipeline internals
#167 opened Jun 10, 2019 by golobor
in the processing pipeline, enable chunking pixels into pd.Dataframe instead of dicts internals
#166 opened Jun 10, 2019 by golobor
check_integrity utility enhancement
#151 opened Feb 11, 2019 by gfudenberg
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