Merge pull request #963 from opencb/TASK-6783

TASK-6783 - IVA TypeError in cohort create when searching for SampleIDs
opencb · Sep 2, 2024 · f769edd · f769edd
2 parents 03ad9d9 + 44ef7ce
commit f769edd
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Showing 2 changed files with 9 additions and 2 deletions.
diff --git a/src/core/clients/opencga/api/ClinicalAnalysis.js b/src/core/clients/opencga/api/ClinicalAnalysis.js
@@ -118,6 +118,7 @@ export default class ClinicalAnalysis extends OpenCGAParentClass {
     * @param {String} [params.dueDate] - Clinical Analysis due date. Format: yyyyMMddHHmmss. Examples: >2018, 2017-2018, <201805.
     * @param {String} [params.qualityControlSummary] - Clinical Analysis quality control summary.
     * @param {String} [params.release] - Release when it was created.
+    * @param {Number} [params.snapshot] - Snapshot value (Latest version of the entry in the specified release).
     * @param {String} [params.status] - Filter by status.
     * @param {String} [params.internalStatus] - Filter by internal status.
     * @param {String} [params.annotation] - Annotation filters. Example: age>30;gender=FEMALE. For more information, please visit
@@ -136,6 +137,7 @@ export default class ClinicalAnalysis extends OpenCGAParentClass {
     * @param {String} [params.id] - Comma separated list of Interpretation IDs up to a maximum of 100. Also admits basic regular expressions
     *     using the operator '~', i.e. '~{perl-regex}' e.g. '~value' for case sensitive, '~/value/i' for case insensitive search.
     * @param {String} [params.uuid] - Comma separated list of Interpretation UUIDs up to a maximum of 100.
+    * @param {String} [params.name] - Comma separated list of Interpretation names up to a maximum of 100.
     * @param {String} [params.clinicalAnalysisId] - Clinical Analysis id.
     * @param {String} [params.analystId] - Analyst ID.
     * @param {String} [params.methodName] - Interpretation method name. Also admits basic regular expressions using the operator '~', i.e.
@@ -166,6 +168,7 @@ export default class ClinicalAnalysis extends OpenCGAParentClass {
     * @param {String} [params.id] - Comma separated list of Interpretation IDs up to a maximum of 100. Also admits basic regular expressions
     *     using the operator '~', i.e. '~{perl-regex}' e.g. '~value' for case sensitive, '~/value/i' for case insensitive search.
     * @param {String} [params.uuid] - Comma separated list of Interpretation UUIDs up to a maximum of 100.
+    * @param {String} [params.name] - Comma separated list of Interpretation names up to a maximum of 100.
     * @param {String} [params.clinicalAnalysisId] - Clinical Analysis id.
     * @param {String} [params.analystId] - Analyst ID.
     * @param {String} [params.methodName] - Interpretation method name. Also admits basic regular expressions using the operator '~', i.e.
@@ -607,6 +610,7 @@ export default class ClinicalAnalysis extends OpenCGAParentClass {
     * @param {String} [params.dueDate] - Clinical Analysis due date. Format: yyyyMMddHHmmss. Examples: >2018, 2017-2018, <201805.
     * @param {String} [params.qualityControlSummary] - Clinical Analysis quality control summary.
     * @param {String} [params.release] - Release when it was created.
+    * @param {Number} [params.snapshot] - Snapshot value (Latest version of the entry in the specified release).
     * @param {String} [params.status] - Filter by status.
     * @param {String} [params.internalStatus] - Filter by internal status.
     * @param {String} [params.annotation] - Annotation filters. Example: age>30;gender=FEMALE. For more information, please visit
@@ -803,6 +807,8 @@ export default class ClinicalAnalysis extends OpenCGAParentClass {
     * @param {String} [params.exclude] - Fields excluded in the response, whole JSON path must be provided.
     * @param {Boolean} [params.flattenAnnotations = "false"] - Flatten the annotations?. The default value is false.
     * @param {String} [params.study] - Study [[organization@]project:]study where study and project can be either the ID or UUID.
+    * @param {String} [params.version] - Comma separated list of clinical versions. 'all' to get all the clinical versions. Not supported if
+    *     multiple clinical ids are provided.
     * @param {Boolean} [params.deleted = "false"] - Boolean to retrieve deleted entries. The default value is false.
     * @returns {Promise} Promise object in the form of RestResponse instance.
     */

diff --git a/src/webcomponents/commons/filters/catalog-search-autocomplete.js b/src/webcomponents/commons/filters/catalog-search-autocomplete.js
@@ -106,10 +106,11 @@ export default class CatalogSearchAutocomplete extends LitElement {
             "SAMPLE": {
                 searchField: "id",
                 placeholder: "HG01879, HG01880, HG01881...",
-                client: this.opencgaSession.opencgaClient.samples(),
+                // client: this.opencgaSession.opencgaClient.samples(),
+                fetch: filters => this.opencgaSession.opencgaClient.samples().search(filters),
                 fields: item => ({
                     "name": item.id,
-                    "Individual ID": item?.individualId
+                    "Individual ID": item?.individualId,
                 }),
                 query: {
                     include: "id,individualId"