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Add multi run support #26

Merged
merged 5 commits into from
Nov 22, 2023
Merged

Add multi run support #26

merged 5 commits into from
Nov 22, 2023

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bendhouseart
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Adds support for multiple runs, fixes naming of registration files to be subject, session, and run specific.

@bendhouseart bendhouseart self-assigned this Nov 22, 2023
@bendhouseart bendhouseart linked an issue Nov 22, 2023 that may be closed by this pull request
petdeface/petdeface.py Outdated Show resolved Hide resolved
dropped name for MRICoreg node
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@bendhouseart bendhouseart left a comment

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tested on our 4 different layouts, appears to be working well. Need to do some refactoring with the naming, but I'm planning on adding in the --pics option before I go down that road is freeview *T1w.nii.gz *_pet.nii.gz ... is a bit tedious.

@bendhouseart bendhouseart merged commit f90fe61 into main Nov 22, 2023
@bendhouseart bendhouseart deleted the add-multi-run-support branch November 22, 2023 17:34
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[BUG] refactor of workflow to accomodate datasets with runs
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